Changelog
v2.4
v2.4.3 (2025-02-06)
Merged pull requests:
Polpy dev #638 (hellohancheng)
Fix installation in Python 3.12 #631 (israelmcmc)
v2.4.2 (2024-05-31)
Merged pull requests:
v2.4.1 (2023-11-04)
Closed issues:
Corrupted Double Linked List Error when using the ROOT minimizer #605
“FitFailed: MIGRAD call failed. This is usually due to unconstrained parameters.” #604
After installation, Issue with: “From threeml import * “ #603
Error with Gtburst and LAT transient builder plugin #598
Help analyze Fermi GBM and Fermi LAT standard data #597
. #594
. #593
use 3ML to analyze Fermi GRB problem? #591
. #590
Install threeML for Mac #589
Error getting install_3ML.sh script to install #584
. #580
unable to analyse LAT data #518
Merged pull requests:
Fix tests #617 (BjoernBiltzinger)
Update documentation for the HAL plugin #608 (torresramiro350)
remove unnecessary folder creation #606 (JohannesBuchner)
v2.4.0 (2022-09-28)
Closed issues:
Install problem #583
. #579
Installation with Fermitools #577
threeml, astromodels, fermitools, fermipy can be used together? #574
. #573
Combined LAT and GBM Analysis #570
. #569
twopc PPC plots don’t work #568
MLE minimization algorithms: an appropriate choice #567
Install threeml, fermitools and fermipy #566
fit Fermi GBM data? #565
Importing chain file from the threeML BayesianAnalysis results over to Xspec #562
plot_spectra() unable to propagate errors and plot #560
Double Bayesian evidence values #559
XS_gauss() equivalent width #558
OGIPLike plugin cannot find spectra: get_path_of_data_file() #556
collections.Sequence is deprecated in Python 3.7 and removed in python 3.10 #555
Use from astromodels Xspec import * error #549
How do I install a stable threeml module? #544
Getting error while trying to build likelihood using Fermi LAT data #529
Using XSTAR atable.fits like in XSPEC #527
Unable to install threeML using the install_3ML.sh script #520
Photometric failing with new speclite #484
Merged pull requests:
v2.3
v2.3.2 (2022-07-27)
Closed issues:
Can BAT and XRT data be downloaded automatically in 3ML? #548
v2.3.1 (2022-07-12)
Closed issues:
Display of XMM response fails (ThreeML v. 2.3.0.dev2) #545
. #543
Deprecated call to collections.Sequence in analysis_results.py #541
Merged pull requests:
v2.3.0 (2022-05-25)
Fixed bugs:
plot_spectra correct for bayesian result? #509
Closed issues:
Not able to import xspec models #534
Is 3ML ready for a Python 3.9 environment? #530
Problem while creating point source object and model #514
Memory leak when simulating datasets with bayesian analysis objects from table models #513
Error building custom model #510
Typo in threeML/plugins/SpectrumLike.py, Line 1105 #497
Problem with RSP2 files #491
Installation with XSPEC models fails #486
Fermi-LAT plugins failing again #482
Residual Plots, Local Models, Source Positioning #477
Compatibility with empirical or PCA-based BXA background #476
Merged pull requests:
fix for pandas version 1.4 #531 (BjoernBiltzinger)
rename nonposy -> nonpositive #517 (BjoernBiltzinger)
TimeSeries background Selection without polynomial fitting #516 (BjoernBiltzinger)
Bug fixes #515 (BjoernBiltzinger)
Typos in the docs for the optional dependencies #508 (DougBurke)
make warning text for infinite likelihood useful #507 (BjoernBiltzinger)
Background deadtime #499 (BjoernBiltzinger)
Fixed the typo in Spectrum.py causing Issue #497 #498 (rwiller)
v2.2
v2.2.4 (2021-08-30)
Closed issues:
Merged pull requests:
v2.2.3 (2021-08-20)
Closed issues:
test against xspec failing #483
BIC and DIC, which one should I use to judge? #479
Obtain light curve #474
XSPEC models cannot be retrieved by load_analysis_results #473
Model selection. #472
Negative Flux and disable log transformation #469
Can threeML &HAL plot tsmap and do morphology ? #466
emcee version incompatibility with naima #435
Background normalization as nuisance parameters in FermipyLike plugin #434
Alternative to root_numpy #404
Merged pull requests:
view_lightcurves for given echans #475 (BjoernBiltzinger)
Allow specification of parameters to be plotted in analysis_results.corner_plot #470 (xboluna)
v2.2.2 (2021-05-18)
Fixed bugs:
Closed issues:
Installation link in README.md doesn’t point to the right location #457
import threeML fails #449
Add ptemcee sampler #441
Simulated data from LAT plugins. #422
test_parallel_pagmo fails #419
Conda really slow in solving the environment with fermi on linux #418
Proper import __all__ statements #400
Merged pull requests:
v2.2.1 (2021-04-07)
Merged pull requests:
v2.2.0 (2021-04-05)
Fixed bugs:
Update to Iminuit 2.0 interface. #392
Closed issues:
fermitools and python 3.8 in the CI tests #444
fermipy doc failing during fit. #436
Fit (point) source positions in FermypyLike #427
Couldn’t import plugin FermiLATLike #405
Energy dependent light curve viewing in TimeSeriesBuilder #399
RuntimeError while performing JointLikelihood analysis on LAT data #397
Docs missing plots and notebook with errors #374
ThreeML HTTP 503 SERVICE UNAVAILABLE for conda channel #371
Merged pull requests:
Try to update rtds-action to fail if it can’t find the docs #446 (henrikef)
Configure fermipy logging to be less verbose #440 (henrikef)
Restore model parameters after likelihood contour calculation #438 (henrikef)
Allow fitting the source position with the fermipy plugin #430 (henrikef)
Fermi-LAT data download: Specify energy range & bug fix #426 (henrikef)
Anastasia Tsvetkova #423 (anastasia-tsvetkova)
Feature logging #412 (BjoernBiltzinger)
v2.1
v2.1.3 (2021-01-24)
v2.1.2 (2021-01-24)
Implemented enhancements:
Fixed bugs:
Not able to do hypothesis probability test using models from Xspec. Gets error specified function is not a known function. #345
FermipyLike.py needs new IRFS for P305 #322
Closed issues:
Use of xspec model #408
Help with threeML fit #365
Version for astroquery #343
Too many samples in fit are thrown #323
internet_connection_is_active fails #315
Plot XYLike data points on fit result #305
Merged pull requests:
v2.1.1 (2020-12-17)
Closed issues:
Help with GBM data analysis #391
Merged pull requests:
v2.1.0 (2020-12-16)
Implemented enhancements:
Closed issues:
v2.0
v2.0.3 (2020-12-08)
Closed issues:
Root minimizer broken? #387
Incompatibility(?) with fermipy 1.0.0? #385
Joint spectral analysis of Fermi GBM and LAT #370
Merged pull requests:
v2.0.2 (2020-11-03)
Merged pull requests:
v2.0.1 (2020-10-30)
Fixed bugs:
Catalog tests failing with astropy 4.1 #382
Merged pull requests:
v2.0.0 (2020-10-22)
Closed issues:
perform time-resolved analysis #379
How to know the goodness of spectral fit? #378
Using Spectral Fits to Calculate Fluxes #377
Merged pull requests:
v1.2
v1.2.0 (2020-09-11)
Fixed bugs:
Cannot display OGIP-like (XMM pn) spectra #372
download_LAT_data returns multiple files for large time interval #356
Closed issues:
Bayesian analysis in python 2.7 #369
Help with GTBurst GUI within Jupyter Notebook #366
How to build pha, bak and rsp files via TimeSeriesBuilder? #364
How to configure and set up the Fermi Science Tools? #363
Builds failing (master not compatible with numpy 1.12 anymore) #329
Merged pull requests:
v1.1
v1.1.1 (2020-05-11)
v1.1.0 (2020-04-30)
Merged pull requests:
v1.0
v1.0.9 (2020-04-28)
Merged pull requests:
v1.0.8 (2020-04-25)
Merged pull requests:
v1.0.7 (2020-04-22)
Merged pull requests:
v1.0.6 (2020-04-17)
v1.0.5 (2020-04-17)
Fixed bugs:
Installation with pip fails for python 2.7.16 #355
Merged pull requests:
v1.0.4 (2020-04-15)
Fixed bugs:
OGIPLike trying to read missing background file when keyword is set to ‘ ‘ #352
Closed issues:
Channel numbers for SpectrumLike #286
v1.0.3 (2020-04-15)
Closed issues:
Error installing threeML #344
Merged pull requests:
v1.0.2 (2020-04-11)
Merged pull requests:
v1.0.1 (2020-04-10)
v1.0.0 (2020-04-10)
Implemented enhancements:
Merged pull requests:
v0.4
v0.4.2 (2020-03-06)
Implemented enhancements:
Improve configuration file handling #114
get_errors() should return a pandas #76
Background subtracted data #70
Add get_number_of_data_points() to prototype #57
Jointlikehood display #51
Plotting of spectra #45
Use panda for results #44
Implement pyopt minimizer #43
Adding PolyChord #33
Dependencies and Notebook #10
MCMC calculation in examples folder appears to be obsolete #5
Ogip model plot and fixes to TTELike + OGIPLike #65 (grburgess)
Fixed bugs:
background selections outside of data intervals crashing background fits in time series #273
Counts spectrum shows data points for detectors beyond its energy selection criteria. #259
JointLikelihoodSet parallel loosing track of parameter paths #218
reading of certain fits types failing. #187
rebiller tuple unpacking #166
ROOT minimizer fail #160
SpectralFlux fails with nuisance parameters #107
GOF failing due to lacking callback #102
Produced PHA files are not compatible with XSPEC #94
Simulated datasets crash because they do not have a native quality member #92
Tests failing #90
LAT Like display #64
contours failing (possibly related to the get_child issue) #55
parameter bound = None causes error #54
Response and GBM files #53
Non-convergence? #29
Exposure in FermiGBMLikeTTE #26
Closed issues:
pytest -vv -rs –pyargs threeML -k “ermipy” fails #337
Problem with installation and testing #336
‘pytest -vv -rs –pyargs threeML’ Fails #335
test_FermipyLike fails #332
FermiGBMBurstCatalog() stopped working #320
fixing build tests #319
FermiLATSourceCatalog fails #317
add build for pypolychord and getdist into docker and/or condo #309
Synchrotron spectrum #307
crash writing fit results with only unitless free parameters to fits file #287
Dropping ROOT for iminuit #283
pip install issue: execfile #279
conda from master #275
ROI definitions in HAWCLike #258
VOTable Depreciation #257
from threeML import problem with corner.py #252
gfortran #251
Light curve plotting limit #243
IO error with import threeML #239
Python2 kernel in jupyter notebook dies while running the code #238
nuisance parameters as instrumental model #234
properties of the spectra and choosing sources for SpectrumLike #229
possibility of having custom properties of the model nodes #228
Background Modeling #227
Fortran issue for mac when installing 3ML #216
typo in installation script #214
ROOT minimizer returns covariance matrix with only NaNs #213
PyGMO minimizer expects alrogrithm name or instance? #211
“The fit failed to converge.” messages do not leave useful information #210
“Current minimum stored after fit and current do not correspond!” messages with all PyGMO algorithms #209
hierarchical way to address model components #208
HAWC, writing model map #207
XS_gabs model is not correctly imported #206
issues with installation of astromodels by dependency from 3ML #194
Reloading a fit with external parameters #185
LRT with different minimizers per model #180
models with too many parameters causing crash due to numpy #178
analysis results and propagate #170
Fit with a combination of models including Composite #159
PHA class to replace PHAContainer #139
Add GBM GRB catalog reader for catalogs #130
Add bad quality flags to LLE plugin #127
Speed up significance binning in EventList #126
add Pyopt and MULTINEST to hawc docker #125
docker and test #119
Time dependent likelihood #113
Results of SpectralFlux.model_flux are out of order #108
get_errors() complaining when doing an error estimate #101
Mac OS 10.10 installation and compilation with anaconda #97
Event list unbinned MLE fitting #67
OGIP Rebinner and errors #62
Combining XRT and XSPEC examples #40
Reduce size of data for GBM example #37
Apply GBM gain correction to files #36
Missing gbm folder in examples #34
check math? #32
missing function make_index #28
no FermiGBMLikeTTE? #27
Problem when trying to Bayes sample #24
from threeML import * broken #19
location of package version info in threeML #18
Plugin to Support Binned Likelihood Profiles #16
Merged pull requests:
Update tests and Fermi catalog to work with the latest version (19) o… #338 (henrikef)
update to the new yaml specifications for loading #321 (grburgess)
Fix: Create MCMC chains directory only on first engine if running par… #316 (felixthebeard)
updated comment on giacomos significance formula #314 (grburgess)
Add properties #313 (BjoernBiltzinger)
Add plot_spectra() to main scope, like legacy plot_point_source_spectra is. #312 (colasri)
free_point_sources_within_radius() in Fermi.py #308 (ke-fang)
fix a small bug at 611 which crashes with older version of liff #301 (zhoouhaoo)
Call calc_TS every time it might be needed just to be sure #297 (henrikef)
make HAWC radial profiles work with energy bins #294 (henrikef)
Fix error when reading in fit results with one free parameter #288 (henrikef)
Exception handling for old versions of aerie #271 (henrikef)
allow spectrumlike from bins to understand tstart and stop #249 (grburgess)
found some issues trying to do bayesian analysis #222 (volodymyrss)
test writing no bkg pha #221 (volodymyrss)
bug importing multinest priors #205 (volodymyrss)
installation instructions case segfault if astromodels is not upgraded #202 (volodymyrss)
test and patch for verifying types of required keywords #201 (volodymyrss)
plotting ratio residuals #198 (volodymyrss)
Support for adding instances of BinnedSpectrum #196 (volodymyrss)
Integral-friendly #192 (volodymyrss)
added custom options in config for residual plots #181 (grburgess)
Added
set_bin_listmethod toHAWCLiketo allow use of non-contiguous … #165 (sammarinelli)switched temporal binner to a child of time interval set #158 (grburgess)
checking for both unicode and str type when reading RSP #154 (grburgess)
added useful errors to RSP set for intelligent catching #152 (grburgess)
deals with GBM RSP2 files that have a single coverage interval… lik… #150 (grburgess)
Importing HAWCLike was causing an error because the hawn module was n… #116 (grburgess)
added covariance computation to jointlikelihood set #104 (grburgess)
added callback to goodness of fit minimizer setting #103 (grburgess)
added native quality to PHAContainer for simulated datasets #93 (grburgess)
added channel selection to set active measurements as well as exclusi… #83 (grburgess)
make ebounds and mc_energies default as floats to avoid overflow in a… #82 (grburgess)
removed some gbm data to reduce storage and update demo accordingly #38 (grburgess)
v0.1
v0.1.0 (2016-04-19)
Fixed bugs:
Shared pointers in the HAWC likelihood package #14
0.1.0 (2016-04-14)
Implemented enhancements:
Fixed bugs:
Cannot find configuration file #8
Closed issues:
io module in 3ML may clash with system io module #4
Merged pull requests:
v0.0
v0.0.5 (2015-02-06)
v0.0.4 (2015-02-06)
v0.0.3 (2015-02-06)
v0.0.2 (2015-02-06)
v0.0.1 (2015-02-06)
Merged pull requests:
* This Changelog was automatically generated by github_changelog_generator