Index

A

ab_magnitudes() (threeML.utils.photometry.filter_set.FilterSet method) abounds (threeML.utils.polarization.binned_polarization.BinnedModulationCurve property) absolute_start (threeML.utils.interval.IntervalSet property) absolute_start_time (threeML.utils.time_interval.TimeIntervalSet property) absolute_stop (threeML.utils.interval.IntervalSet property) absolute_stop_time (threeML.utils.time_interval.TimeIntervalSet property) Accent (threeML.config.plotting_structure.MPLCmap attribute) Accent_r (threeML.config.plotting_structure.MPLCmap attribute) activate_logs() (in module threeML.io.logging) activate_progress_bars() (in module threeML.io.logging) activate_warnings() (in module threeML.io.logging) active_containers (threeML.plugins.experimental.CastroLike.CastroLike property) add_callback() (threeML.minimizer.grid_minimizer.GridMinimizer method) add_data() (threeML.io.plotting.data_residual_plot.ResidualPlot method) add_dimensionless_model() (threeML.io.plotting.model_plot.SpectralContourPlot method) add_inverse_variance_weighted() (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum method) add_method() (in module threeML.minimizer.minuit_minimizer) add_model() (threeML.io.plotting.data_residual_plot.ResidualPlot method) (threeML.io.plotting.model_plot.SpectralContourPlot method) add_model_step() (threeML.io.plotting.data_residual_plot.ResidualPlot method) add_parameter_to_grid() (threeML.minimizer.grid_minimizer.GridMinimizer method) afmhot (threeML.config.plotting_structure.MPLCmap attribute) afmhot_r (threeML.config.plotting_structure.MPLCmap attribute) aic() (in module threeML.utils.statistics.stats_tools) algorithm_name (threeML.minimizer.minimization.Minimizer property) AllFitFailed alpha (threeML.config.plotting_structure.ContourStyle attribute) (threeML.utils.statistics.stats_tools.Significance property) ANALYSIS_RESULTS (class in threeML.analysis_results) ANALYSIS_RESULTS_HDF (class in threeML.analysis_results) analysis_type (threeML.bayesian.bayesian_analysis.BayesianAnalysis property) (threeML.classicMLE.joint_likelihood.JointLikelihood property)

AnalysisResultsFITS (class in threeML.analysis_results) AnalysisResultsSet (class in threeML.analysis_results) ancillary_file (threeML.utils.spectrum.pha_spectrum.PHASpectrum property) (threeML.utils.spectrum.pha_spectrum.PHASpectrumSet property) ApacheDirectory (class in threeML.io.download_from_http) apply_format() (threeML.catalogs.FermiGBM.FermiGBMBurstCatalog method) (threeML.catalogs.FermiGBM.FermiGBMTriggerCatalog method) (threeML.catalogs.FermiLAT.FermiLATSourceCatalog method) (threeML.catalogs.FermiLLE.FermiLLEBurstCatalog method) (threeML.catalogs.Swift.SwiftGRBCatalog method) (threeML.catalogs.VirtualObservatoryCatalog.VirtualObservatoryCatalog method) area_ratio (threeML.plugins.SpectrumLike.SpectrumLike property) arf (threeML.utils.OGIP.response.OGIPResponse property) arf_filename (threeML.utils.OGIP.response.InstrumentResponse property) (threeML.utils.OGIP.response.OGIPResponse property) arg_median() (in module threeML.bayesian.sampler_base) argsort() (threeML.utils.interval.IntervalSet method) array_to_cmap() (in module threeML.bayesian.tutorial_material) arrival_times (threeML.utils.data_builders.fermi.gbm_data.GBMTTEFile property) (threeML.utils.data_builders.fermi.lat_data.LLEFile property) (threeML.utils.time_series.event_list.EventList property) assign_to_source() (threeML.plugins.SpectrumLike.SpectrumLike method) (threeML.plugins.UnresolvedExtendedXYLike.UnresolvedExtendedXYLike method) (threeML.plugins.XYLike.XYLike method) autoemcee (threeML.config.fitting_structure.Sampler attribute) AutoEmceeSampler (class in threeML.bayesian.autoemcee_sampler) autumn (threeML.config.plotting_structure.MPLCmap attribute) autumn_r (threeML.config.plotting_structure.MPLCmap attribute) average (threeML.random_variates.RandomVariates property) (threeML.utils.fitted_objects.fitted_source_handler.GenericFittedSourceHandler property) (threeML.utils.fitted_objects.fitted_source_handler.VariatesContainer property) axes (threeML.io.plotting.data_residual_plot.ResidualPlot property)

B

background_cmap (threeML.config.plotting_structure.BinnedSpectrumPlot attribute) (threeML.config.plotting_structure.FermiSpectrumPlot attribute) background_color (threeML.config.plotting_structure.BinnedSpectrumPlot attribute) (threeML.config.plotting_structure.DataHistPlot attribute) (threeML.config.plotting_structure.FermiSpectrumPlot attribute) (threeML.config.plugin_structure.TimeSeries attribute) background_count_errors (threeML.plugins.SpectrumLike.SpectrumLike property) background_counts (threeML.plugins.SpectrumLike.SpectrumLike property) background_counts_per_interval (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder property) (threeML.utils.data_builders.TimeSeriesBuilder property) background_exposure (threeML.plugins.SpectrumLike.SpectrumLike property) background_file (threeML.utils.spectrum.pha_spectrum.PHASpectrum property) (threeML.utils.spectrum.pha_spectrum.PHASpectrumSet property) background_integrate_method (threeML.plugins.SpectrumLike.SpectrumLike property) background_mpl_kwargs (threeML.config.plotting_structure.BinnedSpectrumPlot attribute) (threeML.config.plotting_structure.FermiSpectrumPlot attribute) background_noise_model (threeML.plugins.SpectrumLike.SpectrumLike property) background_plugin (threeML.plugins.SpectrumLike.SpectrumLike property) background_poly_order (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder property) (threeML.utils.data_builders.TimeSeriesBuilder property) background_scale_factor (threeML.plugins.SpectrumLike.SpectrumLike property) background_selection_color (threeML.config.plugin_structure.TimeSeries attribute) background_spectrum (threeML.plugins.SpectrumLike.SpectrumLike property) bad (threeML.utils.spectrum.binned_spectrum.Quality property) bad_channels_color (threeML.config.plotting_structure.DataHistPlot attribute) BadCovariance BandNode (class in threeML.plugins.PhotometryLike) base_plugin_key (threeML.utils.spectrum.share_spectrum.ShareSpectrum property) bayes (threeML.config.plugin_structure.TimeSeriesFit attribute) bayes_cmap (threeML.config.plotting_structure.PointSourcePlot attribute) bayesian (threeML.config.config_structure.Config attribute) bayesian_blocks() (in module threeML.utils.bayesian_blocks) bayesian_blocks_not_unique() (in module threeML.utils.bayesian_blocks) BayesianAnalysis (class in threeML.bayesian.bayesian_analysis) BayesianAnalysisWrap (class in threeML.bayesian.tutorial_material) BayesianDefault (class in threeML.config.fitting_structure) BayesianResults (class in threeML.analysis_results) berlin (threeML.config.plotting_structure.MPLCmap attribute) berlin_r (threeML.config.plotting_structure.MPLCmap attribute) BetterMinimumDuringProfiling bic() (in module threeML.utils.statistics.stats_tools) bin_by_bayesian_blocks() (threeML.utils.binner.TemporalBinner class method) (threeML.utils.time_series.event_list.EventList method)

bin_by_constant() (threeML.utils.binner.TemporalBinner class method) (threeML.utils.time_series.event_list.EventList method) bin_by_custom() (threeML.utils.binner.TemporalBinner class method) (threeML.utils.time_series.event_list.EventList method) bin_by_significance() (threeML.utils.binner.TemporalBinner class method) (threeML.utils.time_series.event_list.EventList method) bin_entries() (threeML.utils.histogram.Histogram method) bin_stack (threeML.utils.interval.IntervalSet property) binary (threeML.config.plotting_structure.MPLCmap attribute) binary_r (threeML.config.plotting_structure.MPLCmap attribute) binned_light_curve_plot() (in module threeML.io.plotting.light_curve_plots) binned_spectrum_set (threeML.utils.time_series.binned_spectrum_series.BinnedSpectrumSeries property) BinnedModulationCurve (class in threeML.utils.polarization.binned_polarization) BinnedSpectrum (class in threeML.utils.spectrum.binned_spectrum) BinnedSpectrumPlot (class in threeML.config.plotting_structure) BinnedSpectrumSeries (class in threeML.utils.time_series.binned_spectrum_series) BinnedSpectrumSet (class in threeML.utils.spectrum.binned_spectrum_set) BinnedSpectrumWithDispersion (class in threeML.utils.spectrum.binned_spectrum) BinnedStatistic (class in threeML.utils.spectrum.spectrum_likelihood) BinningMethodError bins (threeML.config.plotting_structure.CornerStyle attribute) (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder property) (threeML.utils.data_builders.TimeSeriesBuilder property) (threeML.utils.time_series.binned_spectrum_series.BinnedSpectrumSeries property) (threeML.utils.time_series.event_list.EventList property) (threeML.utils.time_series.time_series.TimeSeries property) bkg_intervals (threeML.utils.time_series.time_series.TimeSeries property) Blues (threeML.config.plotting_structure.MPLCmap attribute) Blues_r (threeML.config.plotting_structure.MPLCmap attribute) bone (threeML.config.plotting_structure.MPLCmap attribute) bone_r (threeML.config.plotting_structure.MPLCmap attribute) BrBG (threeML.config.plotting_structure.MPLCmap attribute) BrBG_r (threeML.config.plotting_structure.MPLCmap attribute) brg (threeML.config.plotting_structure.MPLCmap attribute) brg_r (threeML.config.plotting_structure.MPLCmap attribute) BuGn (threeML.config.plotting_structure.MPLCmap attribute) BuGn_r (threeML.config.plotting_structure.MPLCmap attribute) BuPu (threeML.config.plotting_structure.MPLCmap attribute) BuPu_r (threeML.config.plotting_structure.MPLCmap attribute) bwr (threeML.config.plotting_structure.MPLCmap attribute) bwr_r (threeML.config.plotting_structure.MPLCmap attribute) by_mc() (threeML.classicMLE.goodness_of_fit.GoodnessOfFit method) (threeML.classicMLE.likelihood_ratio_test.LikelihoodRatioTest method)

C

calculate_point_source_flux() (in module threeML.io.calculate_flux) CannotComputeCovariance CannotComputeErrors CannotComputeHessian CannotImportPlugin CastroLike (class in threeML.plugins.experimental.CastroLike) Catalogs (class in threeML.config.catalog_structure) catalogs (threeML.config.catalog_structure.InstrumentCatalog attribute) (threeML.config.config_structure.Config attribute) CatalogServer (class in threeML.config.catalog_structure) ceildiv() (in module threeML.utils.time_series.event_list) (in module threeML.utils.time_series.time_series) Channel (class in threeML.utils.spectrum.binned_spectrum) channel_plot() (in module threeML.io.plotting.light_curve_plots) channel_width (threeML.utils.polarization.binned_polarization.ScatteringChannel property) (threeML.utils.spectrum.binned_spectrum.Channel property) channels_widths (threeML.utils.polarization.binned_polarization.ScatteringChannelSet property) (threeML.utils.spectrum.binned_spectrum.ChannelSet property) ChannelSet (class in threeML.utils.spectrum.binned_spectrum) characterize_sequence() (threeML.analysis_results.AnalysisResultsSet method) cividis (threeML.config.plotting_structure.MPLCmap attribute) cividis_r (threeML.config.plotting_structure.MPLCmap attribute) cleanup_downloaded_GBM_data() (in module threeML.utils.data_download.Fermi_GBM.download_GBM_data) cleanup_downloaded_LLE_data() (in module threeML.utils.data_download.Fermi_LAT.download_LLE_data) clone() (threeML.utils.OGIP.response.InstrumentResponse method) (threeML.utils.polarization.binned_polarization.BinnedModulationCurve method) (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum method) (threeML.utils.spectrum.binned_spectrum.BinnedSpectrumWithDispersion method) (threeML.utils.spectrum.pha_spectrum.PHASpectrum method) (threeML.utils.spectrum.pha_spectrum.PHASpectrumSet method) cmap (threeML.config.plotting_structure.CornerStyle attribute) cmap_intervals() (in module threeML.io.plotting.cmap_cycle) CMRmap (threeML.config.plotting_structure.MPLCmap attribute) CMRmap_r (threeML.config.plotting_structure.MPLCmap attribute) coefficients (threeML.utils.time_series.polynomial.Polynomial property) comparison_corner_plot() (threeML.analysis_results.BayesianResults method) Complex (class in threeML.minimizer.tutorial_material) components (threeML.utils.fitted_objects.fitted_point_sources.FittedPointSourceSpectralHandler property) compute_fermi_relative_mission_times() (in module threeML.utils.fermi_relative_mission_time) compute_TS() (threeML.classicMLE.joint_likelihood.JointLikelihood method) cone_search() (threeML.catalogs.FermiLAT.FermiPySourceCatalog method) (threeML.catalogs.VirtualObservatoryCatalog.VirtualObservatoryCatalog method) ConeSearchFailed Config (class in threeML.config.config_structure) configuration (threeML.plugins.FermipyLike.FermipyLike property) ConfigurationFileCorrupt console (threeML.config.config_structure.Logging attribute) containing_bin() (threeML.utils.interval.IntervalSet method) containing_interval() (threeML.utils.interval.IntervalSet method) contents (threeML.utils.histogram.Histogram property) contour_background (threeML.config.fitting_structure.MLEDefault attribute) contour_cmap (threeML.config.fitting_structure.MLEDefault attribute) (threeML.config.plotting_structure.PointSourcePlot attribute) contour_level_1 (threeML.config.fitting_structure.MLEDefault attribute)

contour_level_2 (threeML.config.fitting_structure.MLEDefault attribute) contour_level_3 (threeML.config.fitting_structure.MLEDefault attribute) contour_style (threeML.config.plotting_structure.PointSourcePlot attribute) contourf_kwargs (threeML.config.plotting_structure.CornerStyle attribute) contours() (threeML.minimizer.minimization.Minimizer method) ContourStyle (class in threeML.config.plotting_structure) convergence_plots() (threeML.analysis_results.BayesianResults method) (threeML.bayesian.bayesian_analysis.BayesianAnalysis method) conversion_factor (threeML.utils.fitted_objects.fitted_point_sources.FluxConversion property) convert_fits_analysis_result_to_hdf() (in module threeML.analysis_results) convolve() (threeML.utils.OGIP.response.InstrumentResponse method) cool (threeML.config.plotting_structure.MPLCmap attribute) cool_r (threeML.config.plotting_structure.MPLCmap attribute) coolwarm (threeML.config.plotting_structure.MPLCmap attribute) coolwarm_r (threeML.config.plotting_structure.MPLCmap attribute) copper (threeML.config.plotting_structure.MPLCmap attribute) copper_r (threeML.config.plotting_structure.MPLCmap attribute) corner_plot() (threeML.analysis_results.BayesianResults method) corner_plot_cc() (threeML.analysis_results.BayesianResults method) corner_style (threeML.config.fitting_structure.BayesianDefault attribute) CornerStyle (class in threeML.config.plotting_structure) correlation_matrix (threeML.classicMLE.joint_likelihood.JointLikelihood property) (threeML.minimizer.minimization.Minimizer property) count_errors (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum property) count_errors_per_bin (threeML.utils.spectrum.binned_spectrum_set.BinnedSpectrumSet property) count_per_channel_over_interval() (threeML.utils.time_series.binned_spectrum_series.BinnedSpectrumSeries method) (threeML.utils.time_series.event_list.EventList method) (threeML.utils.time_series.time_series.TimeSeries method) counts (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum property) counts_color (threeML.config.plotting_structure.DataHistPlot attribute) counts_over_interval() (threeML.utils.time_series.binned_spectrum_series.BinnedSpectrumSeries method) (threeML.utils.time_series.event_list.EventList method) (threeML.utils.time_series.time_series.TimeSeries method) counts_per_bin (threeML.utils.spectrum.binned_spectrum_set.BinnedSpectrumSet property) covariance_matrix (threeML.analysis_results.MLEResults property) (threeML.classicMLE.joint_likelihood.JointLikelihood property) (threeML.minimizer.minimization.Minimizer property) (threeML.utils.time_series.polynomial.Polynomial property) coverage_interval (threeML.utils.OGIP.response.InstrumentResponse property) CppInterfaceNotAvailable create_all_good() (threeML.utils.spectrum.binned_spectrum.Quality class method) create_dummy_response() (threeML.utils.OGIP.response.InstrumentResponse class method) create_time_bins() (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder method) (threeML.utils.data_builders.TimeSeriesBuilder method) CRITICAL (threeML.config.config_structure.LoggingLevel attribute) cubehelix (threeML.config.plotting_structure.MPLCmap attribute) cubehelix_r (threeML.config.plotting_structure.MPLCmap attribute) current_background_count_errors (threeML.plugins.SpectrumLike.SpectrumLike property) current_background_counts (threeML.plugins.SpectrumLike.SpectrumLike property) current_minimum (threeML.classicMLE.joint_likelihood.JointLikelihood property) current_observed_count_errors (threeML.plugins.SpectrumLike.SpectrumLike property) current_observed_counts (threeML.plugins.SpectrumLike.SpectrumLike property) current_scaled_background_counts (threeML.plugins.SpectrumLike.SpectrumLike property) CustomLikelihoodLike (class in threeML.minimizer.tutorial_material)

D

Dark2 (threeML.config.plotting_structure.MPLCmap attribute) Dark2_r (threeML.config.plotting_structure.MPLCmap attribute) dash_separated_string_to_tuple() (in module threeML.utils.string_utils) data_axis (threeML.io.plotting.data_residual_plot.ResidualPlot property) data_cmap (threeML.config.plotting_structure.BinnedSpectrumPlot attribute) (threeML.config.plotting_structure.FermiSpectrumPlot attribute) data_color (threeML.config.plotting_structure.BinnedSpectrumPlot attribute) (threeML.config.plotting_structure.FermiSpectrumPlot attribute) data_ebin_connect (threeML.utils.spectrum.share_spectrum.ShareSpectrum property) data_ein_edges (threeML.utils.spectrum.share_spectrum.ShareSpectrum property) data_list (threeML.bayesian.bayesian_analysis.BayesianAnalysis property) (threeML.classicMLE.joint_likelihood.JointLikelihood property) data_mpl_kwargs (threeML.config.plotting_structure.BinnedSpectrumPlot attribute) (threeML.config.plotting_structure.FermiSpectrumPlot attribute) data_plot (threeML.config.plugin_structure.OGIP attribute) DataHistPlot (class in threeML.config.plotting_structure) DataList (class in threeML.data_list) dead_time_over_interval() (threeML.utils.time_series.binned_spectrum_series.BinnedSpectrumSeries method) deadtime (threeML.utils.data_builders.fermi.gbm_data.GBMTTEFile property) DEBUG (threeML.config.config_structure.LoggingLevel attribute) debug_logs() (threeML.io.logging.LoggingState method) debug_mode() (in module threeML.io.logging) dec_center (threeML.catalogs.VirtualObservatoryCatalog.VirtualObservatoryCatalog property) default_minimizer (threeML.config.fitting_structure.MLEDefault attribute) default_minimizer_algorithm (threeML.config.fitting_structure.MLEDefault attribute) default_minimizer_callback (threeML.config.fitting_structure.MLEDefault attribute) default_sampler (threeML.config.fitting_structure.BayesianDefault attribute) degree (threeML.utils.time_series.polynomial.Polynomial property) deprecated (class in threeML.exceptions.custom_exceptions) det_name (threeML.utils.data_builders.fermi.gbm_data.GBMCdata property) (threeML.utils.data_builders.fermi.gbm_data.GBMTTEFile property) DetDoesNotExist developer (threeML.config.config_structure.Logging attribute) dic() (in module threeML.utils.statistics.stats_tools) DictWithPrettyPrint (class in threeML.io.dict_with_pretty_print) DifferentialFluxConversion (class in threeML.utils.fitted_objects.fitted_point_sources)

directories (threeML.io.download_from_http.ApacheDirectory property) disjoint_patch_plot() (in module threeML.io.plotting.light_curve_plots) DispersionSpectrumLike (class in threeML.plugins.DispersionSpectrumLike) display() (threeML.analysis_results.BayesianResults method) (threeML.analysis_results.MLEResults method) (threeML.io.dict_with_pretty_print.DictWithPrettyPrint method) (threeML.io.results_table.ResultsTable method) (threeML.plugins.SpectrumLike.SpectrumLike method) (threeML.utils.data_builders.fermi.lat_transient_builder.LATLikelihoodParameter method) (threeML.utils.data_builders.fermi.lat_transient_builder.TransientLATDataBuilder method) (threeML.utils.data_builders.TransientLATDataBuilder method) (threeML.utils.histogram.Histogram method) (threeML.utils.time_interval.TimeIntervalSet method) display_filters() (threeML.plugins.PhotometryLike.PhotometryLike method) display_model() (threeML.plugins.FermipyLike.FermipyLike method) (threeML.plugins.SpectrumLike.SpectrumLike method) display_photometry_model_magnitudes() (in module threeML.io.plotting.post_process_data_plots) display_rsp() (threeML.plugins.DispersionSpectrumLike.DispersionSpectrumLike method) display_spectrum_model_counts() (in module threeML.io.plotting.post_process_data_plots) DivParser (class in threeML.utils.data_download.Fermi_LAT.download_LAT_data) download() (threeML.io.download_from_http.ApacheDirectory method) download_all_files() (threeML.io.download_from_http.ApacheDirectory method) download_file_from_ftp() (in module threeML.io.download_from_ftp) download_files_from_directory_ftp() (in module threeML.io.download_from_ftp) download_GBM_daily_data() (in module threeML.utils.data_download.Fermi_GBM.download_GBM_data) download_GBM_trigger_data() (in module threeML.utils.data_download.Fermi_GBM.download_GBM_data) download_LAT_data() (in module threeML.utils.data_download.Fermi_LAT.download_LAT_data) download_LLE_trigger_data() (in module threeML.utils.data_download.Fermi_LAT.download_LLE_data) duration (threeML.utils.time_interval.TimeInterval property) dynesty_dynamic (threeML.config.fitting_structure.Sampler attribute) dynesty_dynmaic_setup (threeML.config.fitting_structure.BayesianDefault attribute) dynesty_nested (threeML.config.fitting_structure.Sampler attribute) dynesty_nested_setup (threeML.config.fitting_structure.BayesianDefault attribute) DynestyDynamicSampler (class in threeML.bayesian.dynesty_sampler) DynestyNestedSampler (class in threeML.bayesian.dynesty_sampler) DynestyPool (class in threeML.bayesian.dynesty_sampler)

E

EBOUNDS (class in threeML.utils.OGIP.response) ebounds (threeML.utils.OGIP.response.InstrumentResponse property) (threeML.utils.OGIP.response.InstrumentResponseSet property) edges (threeML.utils.interval.IntervalSet property) effective_wavelength (threeML.utils.photometry.filter_set.FilterSet property) emax (threeML.config.plotting_structure.PointSourcePlot attribute) emcee (threeML.config.fitting_structure.Sampler attribute) emcee_setup (threeML.config.fitting_structure.BayesianDefault attribute) EmceeSampler (class in threeML.bayesian.emcee_sampler) emin (threeML.config.plotting_structure.PointSourcePlot attribute) ene_unit (threeML.config.plotting_structure.PointSourcePlot attribute) energies (threeML.utils.data_builders.fermi.gbm_data.GBMCdata property) (threeML.utils.data_builders.fermi.gbm_data.GBMTTEFile property) (threeML.utils.data_builders.fermi.lat_data.LLEFile property) energy_boundaries (threeML.plugins.SpectrumLike.SpectrumLike property) energy_edges (threeML.utils.data_builders.fermi.lat_data.LLEFile property) energy_to_channel() (threeML.utils.OGIP.response.InstrumentResponse method) equal_tail_interval() (threeML.random_variates.RandomVariates method) ERROR (threeML.config.config_structure.LoggingLevel attribute) error (threeML.utils.time_series.polynomial.Polynomial property) errors (threeML.utils.histogram.Histogram property) evaluate() (threeML.minimizer.tutorial_material.Complex method) (threeML.minimizer.tutorial_material.Simple method) event_file (threeML.utils.data_builders.fermi.lat_transient_builder.LATObservation property)

EventList (class in threeML.utils.time_series.event_list) EventListWithDeadTime (class in threeML.utils.time_series.event_list) EventListWithDeadTimeFraction (class in threeML.utils.time_series.event_list) EventListWithLiveTime (class in threeML.utils.time_series.event_list) EventObservation (class in threeML.plugins.UnbinnedPoissonLike) events (threeML.plugins.UnbinnedPoissonLike.EventObservation property) exclude_from_fit() (threeML.plugin_prototype.PluginPrototype method) execute_with_progress_bar() (threeML.parallel.parallel_client.ParallelClient method) expected (threeML.utils.statistics.stats_tools.Significance property) expected_model_rate (threeML.plugins.SpectrumLike.SpectrumLike property) exposure (threeML.plugins.SpectrumLike.SpectrumLike property) (threeML.plugins.UnbinnedPoissonLike.EventObservation property) (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum property) exposure_map (threeML.utils.data_builders.fermi.lat_transient_builder.LATObservation property) exposure_over_interval() (threeML.utils.time_series.binned_spectrum_series.BinnedSpectrumSeries method) (threeML.utils.time_series.event_list.EventListWithDeadTime method) (threeML.utils.time_series.event_list.EventListWithDeadTimeFraction method) (threeML.utils.time_series.event_list.EventListWithLiveTime method) (threeML.utils.time_series.time_series.TimeSeries method) exposure_per_bin (threeML.utils.spectrum.binned_spectrum_set.BinnedSpectrumSet property) exposure_ratio (threeML.plugins.SpectrumLike.SpectrumLike property) extend() (threeML.utils.interval.IntervalSet method) extract_events() (threeML.utils.data_download.Fermi_LAT.download_LAT_data.LAT_dataset method) extremes (threeML.config.plotting_structure.CornerStyle attribute)

F

fallback_display() (in module threeML.io.rich_display) fancybox (threeML.config.plotting_structure.LegendStyle attribute) Fermi (threeML.config.catalog_structure.Catalogs attribute) FermiGBMBurstCatalog (class in threeML.catalogs.FermiGBM) FermiGBMTriggerCatalog (class in threeML.catalogs.FermiGBM) FermiLATSourceCatalog (class in threeML.catalogs.FermiLAT) FermiLLEBurstCatalog (class in threeML.catalogs.FermiLLE) Fermipy (class in threeML.config.plugin_structure) fermipy (threeML.config.plugin_structure.Plugins attribute) FermipyLike (class in threeML.plugins.FermipyLike) FermiPySourceCatalog (class in threeML.catalogs.FermiLAT) FermiSpectrumPlot (class in threeML.config.plotting_structure) figure (threeML.io.plotting.data_residual_plot.ResidualPlot property) file_existing_and_readable() (in module threeML.io.file_utils) filename (threeML.utils.spectrum.pha_spectrum.PHASpectrum property) (threeML.utils.spectrum.pha_spectrum.PHASpectrumSet property) files (threeML.io.download_from_http.ApacheDirectory property) fill_contours (threeML.config.plotting_structure.CornerStyle attribute) fill_docs() (in module threeML.bayesian.dynesty_sampler) filter_names (threeML.utils.photometry.filter_set.FilterSet property) FilterLibrary (class in threeML.utils.photometry.filter_library) FilterSet (class in threeML.utils.photometry.filter_set) finalize() (threeML.io.plotting.data_residual_plot.ResidualPlot method) (threeML.io.plotting.model_plot.SpectralContourPlot method) first_channel (threeML.utils.OGIP.response.InstrumentResponse property) (threeML.utils.OGIP.response.OGIPResponse property) fit (threeML.config.plugin_structure.TimeSeries attribute) fit() (threeML.classicMLE.joint_likelihood.JointLikelihood method) (threeML.minimizer.tutorial_material.JointLikelihoodWrap method) (threeML.plugins.XYLike.XYLike method) fit_cmap (threeML.config.plotting_structure.PointSourcePlot attribute) fit_plot (threeML.config.plugin_structure.Fermipy attribute) (threeML.config.plugin_structure.OGIP attribute) (threeML.config.plugin_structure.Photo attribute) fit_poly (threeML.config.plugin_structure.TimeSeriesFit attribute) fit_polynomial() (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder method) (threeML.utils.data_builders.TimeSeriesBuilder method) (threeML.utils.time_series.time_series.TimeSeries method) fit_results (threeML.minimizer.minimization.Minimizer property) fit_trace (threeML.classicMLE.joint_likelihood.JointLikelihood property) FitFailed, [1] fits_file_existing_and_readable() (in module threeML.io.file_utils) FITSExtension (class in threeML.io.fits_file) FITSFile (class in threeML.io.fits_file) FittedPointSourceSpectralHandler (class in threeML.utils.fitted_objects.fitted_point_sources) fix_effective_area_correction() (threeML.plugins.SpectrumLike.SpectrumLike method) fix_extended_sources_within_radius() (threeML.catalogs.catalog_utils.ModelFromFGL method) fix_point_sources_within_radius() (threeML.catalogs.catalog_utils.ModelFromFGL method) fixed_sources_color (threeML.config.plotting_structure.FermiSpectrumPlot attribute) flag (threeML.config.plotting_structure.MPLCmap attribute) flag_r (threeML.config.plotting_structure.MPLCmap attribute) flux_unit (threeML.config.plotting_structure.PointSourcePlot attribute) FluxConversion (class in threeML.utils.fitted_objects.fitted_point_sources) for_timeseries (threeML.plugins.UnbinnedPoissonLike.EventObservation property)

ForbiddenRegionOfParameterSpace frame (threeML.io.results_table.ResultsTable property) free_extended_sources_within_radius() (threeML.catalogs.catalog_utils.ModelFromFGL method) free_point_sources_within_radius() (threeML.catalogs.catalog_utils.ModelFromFGL method) freedman_diaconis_rule() (threeML.analysis_results.BayesianResults static method) from_background() (threeML.plugins.SpectrumLike.SpectrumLike class method) from_dataframe() (threeML.plugins.XYLike.XYLike class method) from_dict() (threeML.utils.photometry.photometric_observation.PhotometericObservation class method) from_dispersion_spectrum() (threeML.utils.spectrum.pha_spectrum.PHASpectrum class method) (threeML.utils.spectrum.pha_spectrum.PHASpectrumSet class method) from_entries() (threeML.utils.histogram.Histogram class method) from_file() (threeML.plugins.PhotometryLike.PhotometryLike class method) from_fits_file() (threeML.utils.OGIP.pha.PHAII class method) from_fits_file_extension() (threeML.io.fits_file.FITSExtension class method) from_function() (threeML.plugins.DispersionSpectrumLike.DispersionSpectrumLike class method) (threeML.plugins.SpectrumLike.SpectrumLike class method) (threeML.plugins.XYLike.XYLike class method) from_gbm_cspec_or_ctime() (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder class method) (threeML.utils.data_builders.TimeSeriesBuilder class method) from_gbm_tte() (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder class method) (threeML.utils.data_builders.TimeSeriesBuilder class method) from_general_dispersion_spectrum() (threeML.plugins.OGIPLike.OGIPLike class method) from_hdf5() (threeML.utils.photometry.photometric_observation.PhotometericObservation class method) from_instrument_response() (threeML.utils.polarization.binned_polarization.ScatteringChannelSet class method) (threeML.utils.spectrum.binned_spectrum.ChannelSet class method) from_konus_pha() (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder class method) (threeML.utils.data_builders.TimeSeriesBuilder class method) from_kwargs() (threeML.plugins.PhotometryLike.PhotometryLike class method) (threeML.utils.photometry.photometric_observation.PhotometericObservation class method) from_lat_lle() (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder class method) (threeML.utils.data_builders.TimeSeriesBuilder class method) from_list_of_edges() (threeML.utils.interval.IntervalSet class method) from_numpy_histogram() (threeML.utils.histogram.Histogram class method) from_ogip() (threeML.utils.spectrum.binned_spectrum.Quality class method) from_pandas() (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum class method) from_phaII() (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder class method) (threeML.utils.data_builders.TimeSeriesBuilder class method) from_polar_polarization() (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder class method) (threeML.utils.data_builders.TimeSeriesBuilder class method) from_polar_spectrum() (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder class method) (threeML.utils.data_builders.TimeSeriesBuilder class method) from_previous_fit() (threeML.utils.time_series.polynomial.Polynomial class method) from_rsp2_file() (threeML.utils.OGIP.response.InstrumentResponseSet class method) from_saved_configuration() (threeML.utils.data_builders.fermi.lat_transient_builder.TransientLATDataBuilder class method) (threeML.utils.data_builders.TransientLATDataBuilder class method) from_starts_and_stops() (threeML.utils.interval.IntervalSet class method) from_strings() (threeML.utils.interval.IntervalSet class method) from_text_file() (threeML.plugins.XYLike.XYLike class method) from_time_series() (threeML.utils.OGIP.pha.PHAII class method) (threeML.utils.polarization.binned_polarization.BinnedModulationCurve class method) (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum class method) (threeML.utils.spectrum.binned_spectrum.BinnedSpectrumWithDispersion class method) ft2_file (threeML.utils.data_builders.fermi.lat_transient_builder.LATObservation property) function (threeML.minimizer.minimization.Minimizer property) FunctionWrapper (class in threeML.minimizer.minimization)

G

GapInCoverageIntervals gaussian_background() (threeML.utils.statistics.stats_tools.Significance method) GaussianObservedGaussianBackgroundStatistic (in module threeML.utils.spectrum.spectrum_likelihood) GaussianObservedStatistic (class in threeML.utils.spectrum.spectrum_likelihood) GBM (threeML.config.config_structure.Config attribute) GBMCdata (class in threeML.utils.data_builders.fermi.gbm_data) GBMTTEFile (class in threeML.utils.data_builders.fermi.gbm_data) GenericFittedSourceHandler (class in threeML.utils.fitted_objects.fitted_source_handler) GenericPlotting (class in threeML.config.plotting_structure) get_available_plugins() (in module threeML) get_background_model() (threeML.plugins.SpectrumLike.SpectrumLike method) get_background_parameters() (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder method) (threeML.utils.data_builders.TimeSeriesBuilder method) get_base_prefix_compat() (in module threeML.parallel.parallel_client) get_basic_config() (threeML.plugins.FermipyLike.FermipyLike static method) get_bayesian_analysis_object_complex_likelihood() (in module threeML.bayesian.tutorial_material) get_bayesian_analysis_object_simple_likelihood() (in module threeML.bayesian.tutorial_material) get_callback() (in module threeML.minimizer.tutorial_material) get_contours() (threeML.classicMLE.joint_likelihood.JointLikelihood method) get_correlation_matrix() (threeML.analysis_results.BayesianResults method) (threeML.analysis_results.MLEResults method) get_current_configuration_copy() (in module threeML.config.config_utils) get_current_value() (threeML.utils.spectrum.spectrum_likelihood.BinnedStatistic method) (threeML.utils.spectrum.spectrum_likelihood.GaussianObservedStatistic method) (threeML.utils.spectrum.spectrum_likelihood.PoissonObservedGaussianBackgroundStatistic method) (threeML.utils.spectrum.spectrum_likelihood.PoissonObservedIdealBackgroundStatistic method) (threeML.utils.spectrum.spectrum_likelihood.PoissonObservedModeledBackgroundStatistic method) (threeML.utils.spectrum.spectrum_likelihood.PoissonObservedNoBackgroundStatistic method) (threeML.utils.spectrum.spectrum_likelihood.PoissonObservedPoissonBackgroundStatistic method) get_detector_information() (threeML.catalogs.FermiGBM.FermiGBMBurstCatalog method) get_disp_value() (threeML.utils.data_builders.fermi.lat_transient_builder.LATLikelihoodParameter method) get_errors() (threeML.classicMLE.joint_likelihood.JointLikelihood method) (threeML.minimizer.minimization.Minimizer method) (threeML.minimizer.minuit_minimizer.MinuitMinimizer method) get_heasarc_table_as_pandas() (in module threeML.io.get_heasarc_table_as_pandas) get_hessian() (in module threeML.utils.differentiation) get_highest_density_posterior_interval() (threeML.analysis_results.BayesianResults method) get_information_dict() (threeML.utils.time_series.time_series.TimeSeries method) get_instance() (threeML.minimizer.minimization.GlobalMinimization method) (threeML.minimizer.minimization.LocalMinimization method) get_jacobian() (in module threeML.utils.differentiation) get_joint_likelihood_object_complex_likelihood() (in module threeML.minimizer.tutorial_material) get_joint_likelihood_object_simple_likelihood() (in module threeML.minimizer.tutorial_material) get_log_like() (threeML.minimizer.tutorial_material.CustomLikelihoodLike method) (threeML.plugin_prototype.PluginPrototype method) (threeML.plugins.experimental.CastroLike.CastroLike method) (threeML.plugins.FermipyLike.FermipyLike method) (threeML.plugins.SpectrumLike.SpectrumLike method) (threeML.plugins.UnbinnedPoissonLike.UnbinnedPoissonLike method) (threeML.plugins.XYLike.XYLike method) get_mask_from_filter_sequence() (threeML.utils.photometry.photometric_observation.PhotometericObservation method) get_measurement() (threeML.plugins.experimental.CastroLike.IntervalContainer method) get_median_fit_model() (threeML.analysis_results.BayesianResults method) get_minimizer() (in module threeML.minimizer.minimization) get_model() (threeML.catalogs.FermiGBM.FermiGBMBurstCatalog method) (threeML.catalogs.FermiLAT.FermiLATSourceCatalog method) (threeML.catalogs.VirtualObservatoryCatalog.VirtualObservatoryCatalog method) (threeML.classicMLE.goodness_of_fit.GoodnessOfFit method) (threeML.plugins.SpectrumLike.SpectrumLike method) (threeML.plugins.XYLike.XYLike method) get_models() (threeML.classicMLE.likelihood_ratio_test.LikelihoodRatioTest method) get_name() (threeML.plugin_prototype.PluginPrototype method) get_new_start_and_stop() (threeML.utils.binner.Rebinner method) get_number_of_data_points() (threeML.minimizer.tutorial_material.CustomLikelihoodLike method) (threeML.plugin_prototype.PluginPrototype method) (threeML.plugins.FermipyLike.FermipyLike method) (threeML.plugins.SpectrumLike.SpectrumLike method) (threeML.plugins.UnbinnedPoissonLike.UnbinnedPoissonLike method) (threeML.plugins.XYLike.XYLike method) get_number_of_engines() (threeML.parallel.parallel_client.ParallelClient method) get_observation_duration() (threeML.plugins.FermipyLike.FermipyLike method) get_other_instrument_information() (threeML.catalogs.Swift.SwiftGRBCatalog method) get_other_observation_information() (threeML.catalogs.Swift.SwiftGRBCatalog method) get_path_of_data_dir() (in module threeML.io.package_data) get_path_of_data_file() (in module threeML.io.package_data) get_path_of_log_dir() (in module threeML.io.logging) get_path_of_log_file() (in module threeML.io.logging) get_path_of_user_config() (in module threeML.io.package_data) get_path_of_user_dir() (in module threeML.io.package_data) get_pha_files() (threeML.plugins.DispersionSpectrumLike.DispersionSpectrumLike method) (threeML.plugins.SpectrumLike.SpectrumLike method) get_photometric_filter_library() (in module threeML.utils.photometry.filter_library) get_poly_info() (threeML.utils.time_series.time_series.TimeSeries method) get_posterior() (threeML.bayesian.sampler_base.SamplerBase method) get_posterior_proxy() (threeML.bayesian.sampler_base.SamplerBase method)

get_random_unique_name() (in module threeML.io.file_utils) get_randomized_background_counts() (threeML.utils.spectrum.spectrum_likelihood.BinnedStatistic method) (threeML.utils.spectrum.spectrum_likelihood.PoissonObservedGaussianBackgroundStatistic method) (threeML.utils.spectrum.spectrum_likelihood.PoissonObservedIdealBackgroundStatistic method) (threeML.utils.spectrum.spectrum_likelihood.PoissonObservedPoissonBackgroundStatistic method) get_randomized_background_errors() (threeML.utils.spectrum.spectrum_likelihood.BinnedStatistic method) (threeML.utils.spectrum.spectrum_likelihood.PoissonObservedGaussianBackgroundStatistic method) (threeML.utils.spectrum.spectrum_likelihood.PoissonObservedModeledBackgroundStatistic method) get_randomized_source_counts() (threeML.utils.spectrum.spectrum_likelihood.BinnedStatistic method) (threeML.utils.spectrum.spectrum_likelihood.GaussianObservedStatistic method) (threeML.utils.spectrum.spectrum_likelihood.PoissonObservedGaussianBackgroundStatistic method) (threeML.utils.spectrum.spectrum_likelihood.PoissonObservedIdealBackgroundStatistic method) (threeML.utils.spectrum.spectrum_likelihood.PoissonObservedModeledBackgroundStatistic method) (threeML.utils.spectrum.spectrum_likelihood.PoissonObservedNoBackgroundStatistic method) (threeML.utils.spectrum.spectrum_likelihood.PoissonObservedPoissonBackgroundStatistic method) get_randomized_source_errors() (threeML.utils.spectrum.spectrum_likelihood.BinnedStatistic method) (threeML.utils.spectrum.spectrum_likelihood.GaussianObservedStatistic method) get_redshift() (threeML.catalogs.Swift.SwiftGRBCatalog method) get_second_minimization_instance() (threeML.minimizer.minimization.GlobalMinimization method) get_signal() (in module threeML.test.test_UnresolvedExtendedXYLike) (in module threeML.test.test_XYLike) get_simulated_data() (threeML.classicMLE.goodness_of_fit.GoodnessOfFit method) (threeML.classicMLE.likelihood_ratio_test.LikelihoodRatioTest method) get_simulated_dataset() (threeML.plugins.DispersionSpectrumLike.DispersionSpectrumLike method) (threeML.plugins.OGIPLike.OGIPLike method) (threeML.plugins.SpectrumLike.SpectrumLike method) (threeML.plugins.XYLike.XYLike method) get_slice() (threeML.utils.spectrum.binned_spectrum.Quality method) get_speclite_filter_library() (in module threeML.utils.photometry.filter_library) get_speclite_filter_path() (in module threeML.utils.photometry.filter_library) get_statistic_frame() (threeML.analysis_results.BayesianResults method) (threeML.analysis_results.MLEResults method) get_threeML_style() (in module threeML.io.plotting.get_style) get_total_poly_count() (threeML.utils.time_series.time_series.TimeSeries method) get_total_poly_error() (threeML.utils.time_series.time_series.TimeSeries method) get_uncertainty_tokens() (in module threeML.io.uncertainty_formatter) get_unique_deterministic_tag() (in module threeML.utils.unique_deterministic_tag) get_value() (in module threeML.config.config_utils) get_value_kwargs() (in module threeML.config.config_utils) gist_earth (threeML.config.plotting_structure.MPLCmap attribute) gist_earth_r (threeML.config.plotting_structure.MPLCmap attribute) gist_gray (threeML.config.plotting_structure.MPLCmap attribute) gist_gray_r (threeML.config.plotting_structure.MPLCmap attribute) gist_grey (threeML.config.plotting_structure.MPLCmap attribute) gist_grey_r (threeML.config.plotting_structure.MPLCmap attribute) gist_heat (threeML.config.plotting_structure.MPLCmap attribute) gist_heat_r (threeML.config.plotting_structure.MPLCmap attribute) gist_ncar (threeML.config.plotting_structure.MPLCmap attribute) gist_ncar_r (threeML.config.plotting_structure.MPLCmap attribute) gist_rainbow (threeML.config.plotting_structure.MPLCmap attribute) gist_rainbow_r (threeML.config.plotting_structure.MPLCmap attribute) gist_stern (threeML.config.plotting_structure.MPLCmap attribute) gist_stern_r (threeML.config.plotting_structure.MPLCmap attribute) gist_yarg (threeML.config.plotting_structure.MPLCmap attribute) gist_yarg_r (threeML.config.plotting_structure.MPLCmap attribute) gist_yerg (threeML.config.plotting_structure.MPLCmap attribute) gist_yerg_r (threeML.config.plotting_structure.MPLCmap attribute) GlobalMinimization (class in threeML.minimizer.minimization) GlobalMinimizer (class in threeML.minimizer.minimization) GnBu (threeML.config.plotting_structure.MPLCmap attribute) GnBu_r (threeML.config.plotting_structure.MPLCmap attribute) gnuplot (threeML.config.plotting_structure.MPLCmap attribute) gnuplot2 (threeML.config.plotting_structure.MPLCmap attribute) gnuplot2_r (threeML.config.plotting_structure.MPLCmap attribute) gnuplot_r (threeML.config.plotting_structure.MPLCmap attribute) go() (threeML.classicMLE.joint_likelihood_set.JointLikelihoodSet method) good (threeML.utils.spectrum.binned_spectrum.Quality property) goodness_of_fit() (threeML.plugins.XYLike.XYLike method) GoodnessOfFit (class in threeML.classicMLE.goodness_of_fit) gray (threeML.config.plotting_structure.MPLCmap attribute) gray_r (threeML.config.plotting_structure.MPLCmap attribute) Grays (threeML.config.plotting_structure.MPLCmap attribute) Grays_r (threeML.config.plotting_structure.MPLCmap attribute) Greens (threeML.config.plotting_structure.MPLCmap attribute) Greens_r (threeML.config.plotting_structure.MPLCmap attribute) grey (threeML.config.plotting_structure.MPLCmap attribute) grey_r (threeML.config.plotting_structure.MPLCmap attribute) Greys (threeML.config.plotting_structure.MPLCmap attribute) Greys_r (threeML.config.plotting_structure.MPLCmap attribute) GridMinimizer (class in threeML.minimizer.grid_minimizer) grouping (threeML.plugins.OGIPLike.OGIPLike property) (threeML.utils.binner.Rebinner property) (threeML.utils.spectrum.pha_spectrum.PHASpectrum property) (threeML.utils.spectrum.pha_spectrum.PHASpectrumSet property) gta (threeML.plugins.FermipyLike.FermipyLike property)

H

half_chi2() (in module threeML.utils.statistics.likelihood_functions) half_time (threeML.utils.time_interval.TimeInterval property) handle_data() (threeML.utils.data_download.Fermi_LAT.download_LAT_data.DivParser method) handle_endtag() (threeML.utils.data_download.Fermi_LAT.download_LAT_data.DivParser method) handle_starttag() (threeML.utils.data_download.Fermi_LAT.download_LAT_data.DivParser method) has_errors (threeML.plugins.XYLike.XYLike property) hdu (threeML.io.fits_file.FITSExtension property)

highest_posterior_density_interval() (threeML.random_variates.RandomVariates method) Histogram (class in threeML.utils.histogram) hot (threeML.config.plotting_structure.MPLCmap attribute) hot_r (threeML.config.plotting_structure.MPLCmap attribute) hsv (threeML.config.plotting_structure.MPLCmap attribute) hsv_r (threeML.config.plotting_structure.MPLCmap attribute) HTTPError

I

if_directory_not_existing_then_make() (in module threeML.io.file_utils) in_virtualenv() (in module threeML.parallel.parallel_client) index_of() (threeML.io.fits_file.FITSFile method) inferno (threeML.config.plotting_structure.MPLCmap attribute) inferno_r (threeML.config.plotting_structure.MPLCmap attribute) INFO (threeML.config.config_structure.LoggingLevel attribute) info() (threeML.io.fits_file.FITSFile method) (threeML.minimizer.tutorial_material.Complex static method) (threeML.minimizer.tutorial_material.Simple static method) inner_fit() (threeML.minimizer.tutorial_material.CustomLikelihoodLike method) (threeML.plugin_prototype.PluginPrototype method) (threeML.plugins.experimental.CastroLike.CastroLike method) (threeML.plugins.FermipyLike.FermipyLike method) (threeML.plugins.SpectrumLike.SpectrumLike method) (threeML.plugins.UnbinnedPoissonLike.UnbinnedPoissonLike method) (threeML.plugins.XYLike.XYLike method) insert() (threeML.data_list.DataList method) instrument (threeML.utils.data_builders.fermi.lat_data.LLEFile property) (threeML.utils.OGIP.pha.PHAII property) (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum property) InstrumentCatalog (class in threeML.config.catalog_structure) InstrumentResponse (class in threeML.utils.OGIP.response) InstrumentResponseSet (class in threeML.utils.OGIP.response) instruments (threeML.utils.photometry.filter_library.FilterLibrary property) integral() (threeML.utils.time_series.polynomial.Polynomial method) integral_error() (threeML.utils.time_series.polynomial.Polynomial method) IntegralFluxConversion (class in threeML.utils.fitted_objects.fitted_point_sources) integrate_flux_method (threeML.config.point_source_structure.PointSourceDefaults attribute) IntegrateMethod (class in threeML.config.point_source_structure) Interface (class in threeML.config.config_structure) interface (threeML.config.config_structure.Config attribute) internet_connection_is_active() (in module threeML.io.network) intersect() (threeML.utils.interval.Interval method)

Interval (class in threeML.utils.interval) interval_to_errors() (in module threeML.io.uncertainty_formatter) INTERVAL_TYPE (threeML.utils.histogram.Histogram attribute) (threeML.utils.interval.IntervalSet attribute) (threeML.utils.polarization.binned_polarization.BinnedModulationCurve attribute) (threeML.utils.polarization.binned_polarization.ScatteringChannelSet attribute) (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum attribute) (threeML.utils.spectrum.binned_spectrum.ChannelSet attribute) (threeML.utils.time_interval.TimeIntervalSet attribute) IntervalContainer (class in threeML.plugins.experimental.CastroLike) IntervalOfInterestNotCovered IntervalsDoNotOverlap IntervalSet (class in threeML.utils.interval) IntervalsNotContiguous invalid_plugin_name() (in module threeML.io.logging) InvalidUnitError is_compatible_with_filter_set() (threeML.utils.photometry.photometric_observation.PhotometericObservation method) is_contiguous() (threeML.utils.interval.IntervalSet method) is_dimensionless (threeML.utils.fitted_objects.fitted_point_sources.FittedPointSourceSpectralHandler property) (threeML.utils.fitted_objects.fitted_point_sources.FluxConversion property) is_in_gti() (threeML.utils.data_builders.fermi.lat_data.LLEFile method) is_inside_notebook() (in module threeML.io.detect_notebook) is_module_importable() (in module threeML) is_multi_interval (threeML.plugins.UnbinnedPoissonLike.EventObservation property) is_parallel_computation_active() (in module threeML.parallel.parallel_client) is_plugin_available() (in module threeML) is_poisson (threeML.plugins.XYLike.XYLike property) (threeML.utils.histogram.Histogram property) (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum property) is_power_of_2() (in module threeML.utils.power_of_two_utils) is_set (threeML.utils.data_builders.fermi.lat_transient_builder.LATLikelihoodParameter property) is_sorted (threeML.utils.interval.IntervalSet property) items() (threeML.utils.photometry.photometric_observation.PhotometericObservation method)

J

jet (threeML.config.plotting_structure.MPLCmap attribute) jet_r (threeML.config.plotting_structure.MPLCmap attribute) JointLikelihood (class in threeML.classicMLE.joint_likelihood)

JointLikelihoodSet (class in threeML.classicMLE.joint_likelihood_set) JointLikelihoodSetAnalyzer (class in threeML.classicMLE.joint_likelihood_set) JointLikelihoodWrap (class in threeML.minimizer.tutorial_material) jump_tracking() (threeML.minimizer.tutorial_material.Simple method)

K

keys() (threeML.data_list.DataList method) (threeML.utils.photometry.photometric_observation.PhotometericObservation method)

known_background() (threeML.utils.statistics.stats_tools.Significance method)

L

LAT (threeML.config.config_structure.Config attribute) LAT_dataset (class in threeML.utils.data_download.Fermi_LAT.download_LAT_data) LATLikelihoodParameter (class in threeML.utils.data_builders.fermi.lat_transient_builder) LATObservation (class in threeML.utils.data_builders.fermi.lat_transient_builder) legend_font_size (threeML.config.plotting_structure.ResidualPlot attribute) legend_style (threeML.config.plotting_structure.PointSourcePlot attribute) LegendStyle (class in threeML.config.plotting_structure) level (threeML.config.config_structure.Logging attribute) levels (threeML.config.plotting_structure.CornerStyle attribute) li_and_ma() (threeML.utils.statistics.stats_tools.Significance method) li_and_ma_equivalent_for_gaussian_background() (threeML.utils.statistics.stats_tools.Significance method) light_curve_color (threeML.config.plugin_structure.TimeSeries attribute) likelihood_model (threeML.bayesian.bayesian_analysis.BayesianAnalysis property) (threeML.classicMLE.joint_likelihood.JointLikelihood property) (threeML.plugins.SpectrumLike.SpectrumLike property) (threeML.plugins.XYLike.XYLike property) LikelihoodIsInfinite LikelihoodRatioTest (class in threeML.classicMLE.likelihood_ratio_test) liketype (threeML.utils.data_builders.fermi.lat_transient_builder.LATObservation property) linestyle (threeML.config.plotting_structure.PlotStyle attribute) linewidth (threeML.config.plotting_structure.PlotStyle attribute) (threeML.config.plotting_structure.ResidualPlot attribute) livetime (threeML.utils.data_builders.fermi.lat_data.LLEFile property)

livetime_cube (threeML.utils.data_builders.fermi.lat_transient_builder.LATObservation property) livetime_start (threeML.utils.data_builders.fermi.lat_data.LLEFile property) livetime_stop (threeML.utils.data_builders.fermi.lat_data.LLEFile property) LLEFile (class in threeML.utils.data_builders.fermi.lat_data) load_analysis_results() (in module threeML.analysis_results) load_analysis_results_hdf() (in module threeML.analysis_results) loc (threeML.config.plotting_structure.LegendStyle attribute) LocalMinimization (class in threeML.minimizer.minimization) LocalMinimizer (class in threeML.minimizer.minimization) log_like_values (threeML.bayesian.bayesian_analysis.BayesianAnalysis property) (threeML.bayesian.sampler_base.SamplerBase property) log_marginal_likelihood (threeML.bayesian.bayesian_analysis.BayesianAnalysis property) (threeML.bayesian.sampler_base.SamplerBase property) log_probability (threeML.analysis_results.BayesianResults property) log_probability_values (threeML.bayesian.bayesian_analysis.BayesianAnalysis property) (threeML.bayesian.sampler_base.SamplerBase property) Logging (class in threeML.config.config_structure) logging (threeML.config.config_structure.Config attribute) LoggingLevel (class in threeML.config.config_structure) LoggingState (class in threeML.io.logging) loud_logs() (threeML.io.logging.LoggingState method) loud_mode() (in module threeML.io.logging) lower_error (threeML.utils.fitted_objects.fitted_source_handler.GenericFittedSourceHandler property) (threeML.utils.fitted_objects.fitted_source_handler.VariatesContainer property)

M

magma (threeML.config.plotting_structure.MPLCmap attribute) magma_r (threeML.config.plotting_structure.MPLCmap attribute) magnitude_errors (threeML.plugins.PhotometryLike.PhotometryLike property) magnitudes (threeML.plugins.PhotometryLike.PhotometryLike property) make_LAT_dataset() (threeML.utils.data_download.Fermi_LAT.download_LAT_data.LAT_dataset method) managua (threeML.config.plotting_structure.MPLCmap attribute) managua_r (threeML.config.plotting_structure.MPLCmap attribute) map() (threeML.bayesian.dynesty_sampler.DynestyPool method) marker (threeML.config.plotting_structure.ResidualPlot attribute) mask (threeML.plugins.SpectrumLike.SpectrumLike property) masked_channels_color (threeML.config.plotting_structure.DataHistPlot attribute) MATRIX (class in threeML.utils.OGIP.response) matrix (threeML.utils.OGIP.response.InstrumentResponse property) max_number_samples (threeML.config.point_source_structure.PointSourceDefaults attribute) MCMCSampler (class in threeML.bayesian.sampler_base) measurement (threeML.utils.time_series.event_list.EventList property) median (threeML.random_variates.RandomVariates property) (threeML.utils.fitted_objects.fitted_source_handler.GenericFittedSourceHandler property) (threeML.utils.fitted_objects.fitted_source_handler.VariatesContainer property) merge() (threeML.utils.interval.Interval method) merge_intersecting_intervals() (threeML.utils.interval.IntervalSet method) merge_LAT_data() (in module threeML.utils.data_download.Fermi_LAT.download_LAT_data) mid_point (threeML.utils.interval.Interval property) mid_points (threeML.utils.interval.IntervalSet property) minimize() (threeML.minimizer.minimization.Minimizer method) Minimizer (class in threeML.minimizer.minimization) minimizer (threeML.classicMLE.joint_likelihood.JointLikelihood property) minimizer_in_use (threeML.classicMLE.joint_likelihood.JointLikelihood property) MinimizerNotAvailable, [1] MinLargerMax MINOSFailed minuit (threeML.config.fitting_structure.Optimizer attribute) MinuitMinimizer (class in threeML.minimizer.minuit_minimizer) minus_log_like_profile() (threeML.classicMLE.joint_likelihood.JointLikelihood method) mission (threeML.utils.data_builders.fermi.gbm_data.GBMCdata property) (threeML.utils.data_builders.fermi.gbm_data.GBMTTEFile property) (threeML.utils.data_builders.fermi.lat_data.LLEFile property) (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum property) mle (threeML.config.config_structure.Config attribute) MLEDefault (class in threeML.config.fitting_structure) MLEResults (class in threeML.analysis_results) model (threeML.utils.fitted_objects.fitted_point_sources.FluxConversion property) model_cmap (threeML.config.plotting_structure.BinnedSpectrumPlot attribute) (threeML.config.plotting_structure.FermiSpectrumPlot attribute) model_color (threeML.config.plotting_structure.BinnedSpectrumPlot attribute) (threeML.config.plotting_structure.FermiSpectrumPlot attribute) model_integrate_method (threeML.plugins.SpectrumLike.SpectrumLike property) model_mpl_kwargs (threeML.config.plotting_structure.BinnedSpectrumPlot attribute) (threeML.config.plotting_structure.FermiSpectrumPlot attribute) model_plot (threeML.config.config_structure.Config attribute) ModelFromFGL (class in threeML.catalogs.catalog_utils) ModelPlotting (class in threeML.config.plotting_structure) module threeML threeML.analysis_results threeML.bayesian threeML.bayesian.autoemcee_sampler threeML.bayesian.bayesian_analysis threeML.bayesian.dynesty_sampler threeML.bayesian.emcee_sampler threeML.bayesian.multinest_sampler threeML.bayesian.nautilus_sampler threeML.bayesian.sampler_base threeML.bayesian.tutorial_material threeML.bayesian.ultranest_sampler threeML.bayesian.zeus_sampler threeML.catalogs threeML.catalogs.catalog_utils threeML.catalogs.Fermi threeML.catalogs.FermiGBM threeML.catalogs.FermiLAT threeML.catalogs.FermiLLE threeML.catalogs.Swift threeML.catalogs.VirtualObservatoryCatalog threeML.classicMLE threeML.classicMLE.goodness_of_fit threeML.classicMLE.joint_likelihood threeML.classicMLE.joint_likelihood_set threeML.classicMLE.likelihood_ratio_test threeML.config threeML.config.catalog_structure threeML.config.config threeML.config.config_structure threeML.config.config_utils threeML.config.fitting_structure threeML.config.plotting_structure threeML.config.plugin_structure threeML.config.point_source_structure threeML.data_list threeML.exceptions threeML.exceptions.custom_exceptions threeML.io threeML.io.calculate_flux threeML.io.cern_root_utils threeML.io.configuration threeML.io.detect_notebook threeML.io.dict_with_pretty_print threeML.io.download_from_ftp threeML.io.download_from_http threeML.io.file_utils threeML.io.fits_file threeML.io.get_heasarc_table_as_pandas threeML.io.hdf5_utils threeML.io.logging threeML.io.network threeML.io.package_data threeML.io.plotting threeML.io.plotting.cmap_cycle threeML.io.plotting.data_residual_plot threeML.io.plotting.get_style threeML.io.plotting.light_curve_plots threeML.io.plotting.model_plot threeML.io.plotting.model_plot_2D threeML.io.plotting.model_plot_tags threeML.io.plotting.post_process_data_plots threeML.io.plotting.step_plot threeML.io.results_table threeML.io.rich_display threeML.io.serialization threeML.io.suppress_stdout threeML.io.table threeML.io.uncertainty_formatter threeML.minimizer threeML.minimizer.grid_minimizer threeML.minimizer.minimization threeML.minimizer.minuit_minimizer threeML.minimizer.scipy_minimizer threeML.minimizer.tutorial_material threeML.parallel threeML.parallel.parallel_client threeML.plugin_prototype threeML.plugins threeML.plugins.BinnedProfileLike threeML.plugins.DispersionSpectrumLike threeML.plugins.experimental threeML.plugins.experimental.CastroLike threeML.plugins.FermipyLike threeML.plugins.OGIPLike threeML.plugins.PhotometryLike threeML.plugins.SpectrumLike threeML.plugins.SwiftXRTLike threeML.plugins.UnbinnedPoissonLike threeML.plugins.UnresolvedExtendedXYLike threeML.plugins.XYLike threeML.random_variates threeML.test threeML.test.test_analysis_results threeML.test.test_file_utils threeML.test.test_generic threeML.test.test_get_package_data threeML.test.test_goodness_of_fit threeML.test.test_power_of_two_utils threeML.test.test_time_energy_fit threeML.test.test_UnresolvedExtendedXYLike threeML.test.test_utils threeML.test.test_verbosity threeML.test.test_XYLike threeML.utils threeML.utils.bayesian_blocks threeML.utils.binner threeML.utils.cartesian threeML.utils.data_builders threeML.utils.data_builders.fermi threeML.utils.data_builders.fermi.gbm_data threeML.utils.data_builders.fermi.lat_data threeML.utils.data_builders.fermi.lat_transient_builder threeML.utils.data_builders.time_series_builder threeML.utils.data_download threeML.utils.data_download.Fermi_GBM threeML.utils.data_download.Fermi_GBM.download_GBM_data threeML.utils.data_download.Fermi_LAT threeML.utils.data_download.Fermi_LAT.download_LAT_data threeML.utils.data_download.Fermi_LAT.download_LLE_data threeML.utils.differentiation threeML.utils.fermi_relative_mission_time threeML.utils.fitted_objects threeML.utils.fitted_objects.fitted_point_sources threeML.utils.fitted_objects.fitted_source_handler threeML.utils.histogram threeML.utils.interval threeML.utils.numba_utils threeML.utils.OGIP threeML.utils.OGIP.pha threeML.utils.OGIP.response threeML.utils.photometry threeML.utils.photometry.filter_library threeML.utils.photometry.filter_set threeML.utils.photometry.photometric_observation threeML.utils.polarization threeML.utils.polarization.binned_polarization threeML.utils.power_of_two_utils threeML.utils.progress_bar threeML.utils.spectrum threeML.utils.spectrum.binned_spectrum threeML.utils.spectrum.binned_spectrum_set threeML.utils.spectrum.pha_spectrum threeML.utils.spectrum.share_spectrum threeML.utils.spectrum.spectrum_likelihood threeML.utils.statistics threeML.utils.statistics.gammaln threeML.utils.statistics.likelihood_functions threeML.utils.statistics.stats_tools threeML.utils.step_parameter_generator threeML.utils.string_utils threeML.utils.time_interval threeML.utils.time_series threeML.utils.time_series.binned_spectrum_series threeML.utils.time_series.event_list threeML.utils.time_series.polynomial threeML.utils.time_series.time_series threeML.utils.unique_deterministic_tag

monte_carlo_energies (threeML.utils.OGIP.response.InstrumentResponse property) (threeML.utils.OGIP.response.InstrumentResponseSet property) MPLCmap (class in threeML.config.plotting_structure) mplstyle (threeML.config.plotting_structure.GenericPlotting attribute) multi_progress_cmap (threeML.config.config_structure.Interface attribute) multi_progress_color (threeML.config.config_structure.Interface attribute) multinest (threeML.config.fitting_structure.Sampler attribute) multinest_setup (threeML.config.fitting_structure.BayesianDefault attribute) MultiNestSampler (class in threeML.bayesian.multinest_sampler) my_format_warning() (in module threeML.exceptions.custom_exceptions)

N

n_bands (threeML.utils.photometry.filter_set.FilterSet property) n_bins (threeML.utils.binner.Rebinner property) n_channel (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum property) n_channels (threeML.utils.data_builders.fermi.gbm_data.GBMCdata property) (threeML.utils.data_builders.fermi.gbm_data.GBMTTEFile property) (threeML.utils.data_builders.fermi.lat_data.LLEFile property) (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum property) (threeML.utils.spectrum.binned_spectrum_set.BinnedSpectrumSet property) (threeML.utils.time_series.time_series.TimeSeries property) n_colors (threeML.config.plotting_structure.BinnedSpectrumPlot attribute) n_data_points (threeML.plugins.SpectrumLike.SpectrumLike property) n_elements (threeML.utils.spectrum.binned_spectrum.Quality property) n_events (threeML.plugins.UnbinnedPoissonLike.EventObservation property) (threeML.utils.time_series.event_list.EventList property) n_integration_points (threeML.plugins.experimental.CastroLike.IntervalContainer property) name (threeML.plugin_prototype.PluginPrototype property) (threeML.utils.data_builders.fermi.lat_transient_builder.LATLikelihoodParameter property) native_filter_names (threeML.utils.photometry.filter_set.FilterSet property) NautilusSampler (class in threeML.bayesian.nautilus_sampler) nb_sum() (in module threeML.utils.numba_utils) NegativeBackground net (threeML.utils.statistics.stats_tools.Significance property)

new() (threeML.utils.interval.Interval class method) (threeML.utils.interval.IntervalSet class method) new_interval() (threeML.utils.interval.IntervalSet class method) next_power_of_2() (in module threeML.utils.power_of_two_utils) nipy_spectral (threeML.config.plotting_structure.MPLCmap attribute) nipy_spectral_r (threeML.config.plotting_structure.MPLCmap attribute) NoCoverageIntervals Noff (threeML.utils.statistics.stats_tools.Significance property) NoFitYet NoMatrixForInterval Non (threeML.utils.statistics.stats_tools.Significance property) NonContiguousCoverageIntervals NoParallelEnvironment NotANumberInLikelihood NotASpeclikeFilter NotAvailableStatistic (class in threeML.utils.spectrum.spectrum_likelihood) NotCompositeModelError NotEnoughData Npar (threeML.minimizer.minimization.Minimizer property) nuisance_parameters (threeML.plugin_prototype.PluginPrototype property) null_hypothesis_probability (threeML.classicMLE.likelihood_ratio_test.LikelihoodRatioTest property) num_ene (threeML.config.plotting_structure.PointSourcePlot attribute) NumericMatrix (class in threeML.io.table)

O

observation (threeML.plugins.PhotometryLike.PhotometryLike property) observation_noise_model (threeML.plugins.SpectrumLike.SpectrumLike property) ObservatoryNode (class in threeML.utils.photometry.filter_library) observed_count_errors (threeML.plugins.SpectrumLike.SpectrumLike property) observed_counts (threeML.plugins.SpectrumLike.SpectrumLike property) observed_spectrum (threeML.plugins.SpectrumLike.SpectrumLike property) ocean (threeML.config.plotting_structure.MPLCmap attribute) ocean_r (threeML.config.plotting_structure.MPLCmap attribute) off (threeML.plugins.PhotometryLike.BandNode property) OGIP (class in threeML.config.plugin_structure) ogip (threeML.config.plugin_structure.Plugins attribute)

OGIPLike (class in threeML.plugins.OGIPLike) OGIPResponse (class in threeML.utils.OGIP.response) on (threeML.plugins.PhotometryLike.BandNode property) Optimizer (class in threeML.config.fitting_structure) Oranges (threeML.config.plotting_structure.MPLCmap attribute) Oranges_r (threeML.config.plotting_structure.MPLCmap attribute) OrRd (threeML.config.plotting_structure.MPLCmap attribute) OrRd_r (threeML.config.plotting_structure.MPLCmap attribute) other_observing_instruments (threeML.catalogs.Swift.SwiftGRBCatalog property) OverLappingIntervals, [1] overlaps_with() (threeML.utils.interval.Interval method)

P

Paired (threeML.config.plotting_structure.MPLCmap attribute) Paired_r (threeML.config.plotting_structure.MPLCmap attribute) Parallel (class in threeML.config.config_structure) parallel (threeML.config.config_structure.Config attribute) parallel_computation() (in module threeML.parallel.parallel_client) ParallelClient (class in threeML.parallel.parallel_client) ParameterIsNotFree ParameterOnBoundary parameters (threeML.minimizer.minimization.Minimizer property) Pastel1 (threeML.config.plotting_structure.MPLCmap attribute) Pastel1_r (threeML.config.plotting_structure.MPLCmap attribute) Pastel2 (threeML.config.plotting_structure.MPLCmap attribute) Pastel2_r (threeML.config.plotting_structure.MPLCmap attribute) path (threeML.config.config_structure.Logging attribute) path_exists_and_is_directory() (in module threeML.io.file_utils) PHAII (class in threeML.utils.OGIP.pha) PHASpectrum (class in threeML.utils.spectrum.pha_spectrum) PHASpectrumSet (class in threeML.utils.spectrum.pha_spectrum) PHAWrite (class in threeML.utils.OGIP.pha) Photo (class in threeML.config.plugin_structure) photo (threeML.config.plugin_structure.Plugins attribute) PhotometericObservation (class in threeML.utils.photometry.photometric_observation) PhotometryLike (class in threeML.plugins.PhotometryLike) pink (threeML.config.plotting_structure.MPLCmap attribute) pink_r (threeML.config.plotting_structure.MPLCmap attribute) PiYG (threeML.config.plotting_structure.MPLCmap attribute) PiYG_r (threeML.config.plotting_structure.MPLCmap attribute) plasma (threeML.config.plotting_structure.MPLCmap attribute) plasma_r (threeML.config.plotting_structure.MPLCmap attribute) plot() (threeML.plugins.experimental.CastroLike.CastroLike method) (threeML.plugins.PhotometryLike.PhotometryLike method) (threeML.plugins.UnresolvedExtendedXYLike.UnresolvedExtendedXYLike method) (threeML.plugins.XYLike.XYLike method) plot_all_contours() (threeML.classicMLE.joint_likelihood.JointLikelihood method) plot_chains() (threeML.analysis_results.BayesianResults method) (threeML.bayesian.bayesian_analysis.BayesianAnalysis method) plot_filters() (threeML.utils.photometry.filter_set.FilterSet method) plot_likelihood_function() (in module threeML.bayesian.tutorial_material) (in module threeML.minimizer.tutorial_material) plot_matrix() (threeML.utils.OGIP.response.InstrumentResponse method) plot_minimizer_path() (in module threeML.minimizer.tutorial_material) plot_point_source_spectra() (in module threeML.io.plotting.model_plot) plot_sample_path() (in module threeML.bayesian.tutorial_material) plot_spectra() (in module threeML.io.plotting.model_plot) plot_style (threeML.config.plotting_structure.PointSourcePlot attribute) plot_TS_distribution() (threeML.classicMLE.likelihood_ratio_test.LikelihoodRatioTest method) plot_tte_lightcurve() (in module threeML.io.plotting.light_curve_plots) PlotStyle (class in threeML.config.plotting_structure)

plotting (threeML.config.config_structure.Config attribute) PluginPrototype (class in threeML.plugin_prototype) Plugins (class in threeML.config.plugin_structure) plugins (threeML.config.config_structure.Config attribute) point_source (threeML.config.config_structure.Config attribute) point_source_plot (threeML.config.plotting_structure.ModelPlotting attribute) PointSourceDefaults (class in threeML.config.point_source_structure) PointSourcePlot (class in threeML.config.plotting_structure) poisson_log_likelihood_ideal_bkg() (in module threeML.utils.statistics.likelihood_functions) poisson_observed_gaussian_background() (in module threeML.utils.statistics.likelihood_functions) poisson_observed_poisson_background() (in module threeML.utils.statistics.likelihood_functions) poisson_observed_poisson_background_xs() (in module threeML.utils.statistics.likelihood_functions) PoissonObservedGaussianBackgroundStatistic (class in threeML.utils.spectrum.spectrum_likelihood) PoissonObservedIdealBackgroundStatistic (class in threeML.utils.spectrum.spectrum_likelihood) PoissonObservedModeledBackgroundStatistic (class in threeML.utils.spectrum.spectrum_likelihood) PoissonObservedNoBackgroundStatistic (class in threeML.utils.spectrum.spectrum_likelihood) PoissonObservedPoissonBackgroundStatistic (class in threeML.utils.spectrum.spectrum_likelihood) PoissonResiduals (class in threeML.utils.statistics.stats_tools) poly_fit_exists (threeML.utils.time_series.time_series.TimeSeries property) poly_order (threeML.utils.time_series.time_series.TimeSeries property) polyfit() (in module threeML.utils.time_series.polynomial) Polynomial (class in threeML.utils.time_series.polynomial) polynomials (threeML.utils.time_series.time_series.TimeSeries property) pop() (threeML.utils.interval.IntervalSet method) PRGn (threeML.config.plotting_structure.MPLCmap attribute) PRGn_r (threeML.config.plotting_structure.MPLCmap attribute) prism (threeML.config.plotting_structure.MPLCmap attribute) prism_r (threeML.config.plotting_structure.MPLCmap attribute) profile_color (threeML.config.fitting_structure.MLEDefault attribute) profile_level_1 (threeML.config.fitting_structure.MLEDefault attribute) profile_level_2 (threeML.config.fitting_structure.MLEDefault attribute) profile_level_3 (threeML.config.fitting_structure.MLEDefault attribute) profile_name (threeML.config.config_structure.Parallel attribute) ProfileLikelihood (class in threeML.minimizer.minimization) progress_bar_color (threeML.config.config_structure.Interface attribute) progress_bars (threeML.config.config_structure.Interface attribute) public_ftp_location (threeML.config.catalog_structure.PublicDataServer attribute) public_http_location (threeML.config.catalog_structure.PublicDataServer attribute) PublicDataServer (class in threeML.config.catalog_structure) PuBu (threeML.config.plotting_structure.MPLCmap attribute) PuBu_r (threeML.config.plotting_structure.MPLCmap attribute) PuBuGn (threeML.config.plotting_structure.MPLCmap attribute) PuBuGn_r (threeML.config.plotting_structure.MPLCmap attribute) PuOr (threeML.config.plotting_structure.MPLCmap attribute) PuOr_r (threeML.config.plotting_structure.MPLCmap attribute) PuRd (threeML.config.plotting_structure.MPLCmap attribute) PuRd_r (threeML.config.plotting_structure.MPLCmap attribute) Purples (threeML.config.plotting_structure.MPLCmap attribute) Purples_r (threeML.config.plotting_structure.MPLCmap attribute)

Q

quad (threeML.config.point_source_structure.IntegrateMethod attribute) Quality (class in threeML.utils.spectrum.binned_spectrum) quality (threeML.plugins.SpectrumLike.SpectrumLike property) (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum property) quality_per_bin (threeML.utils.spectrum.binned_spectrum_set.BinnedSpectrumSet property)

quantiles (threeML.config.plotting_structure.CornerStyle attribute) query() (threeML.catalogs.VirtualObservatoryCatalog.VirtualObservatoryCatalog method) query_form (threeML.config.catalog_structure.PublicDataServer attribute) query_other_observing_instruments() (threeML.catalogs.Swift.SwiftGRBCatalog method) query_sources() (threeML.catalogs.VirtualObservatoryCatalog.VirtualObservatoryCatalog method) quiet_mode() (in module threeML.io.logging)

R

ra_center (threeML.catalogs.VirtualObservatoryCatalog.VirtualObservatoryCatalog property) rainbow (threeML.config.plotting_structure.MPLCmap attribute) rainbow_r (threeML.config.plotting_structure.MPLCmap attribute) RandomVariates (class in threeML.random_variates) rate_errors (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum property) rate_errors_per_bin (threeML.utils.spectrum.binned_spectrum_set.BinnedSpectrumSet property) rates (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum property) rates_per_bin (threeML.utils.spectrum.binned_spectrum_set.BinnedSpectrumSet property) ratio_residuals (threeML.io.plotting.data_residual_plot.ResidualPlot property) raw_samples (threeML.bayesian.bayesian_analysis.BayesianAnalysis property) (threeML.bayesian.sampler_base.SamplerBase property) RdBu (threeML.config.plotting_structure.MPLCmap attribute) RdBu_r (threeML.config.plotting_structure.MPLCmap attribute) RdGy (threeML.config.plotting_structure.MPLCmap attribute) RdGy_r (threeML.config.plotting_structure.MPLCmap attribute) RdPu (threeML.config.plotting_structure.MPLCmap attribute) RdPu_r (threeML.config.plotting_structure.MPLCmap attribute) RdYlBu (threeML.config.plotting_structure.MPLCmap attribute) RdYlBu_r (threeML.config.plotting_structure.MPLCmap attribute) RdYlGn (threeML.config.plotting_structure.MPLCmap attribute) RdYlGn_r (threeML.config.plotting_structure.MPLCmap attribute) read_bins() (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder method) (threeML.utils.data_builders.TimeSeriesBuilder method) rebin() (threeML.utils.binner.Rebinner method) rebin_errors() (threeML.utils.binner.Rebinner method) rebin_on_background() (threeML.plugins.SpectrumLike.SpectrumLike method) rebin_on_source() (threeML.plugins.SpectrumLike.SpectrumLike method) Rebinner (class in threeML.utils.binner) recurse_dict() (in module threeML.config.config_utils) recursively_load_dict_contents_from_group() (in module threeML.io.hdf5_utils) recursively_save_dict_contents_to_group() (in module threeML.io.hdf5_utils) Reds (threeML.config.plotting_structure.MPLCmap attribute) Reds_r (threeML.config.plotting_structure.MPLCmap attribute) ReducingNumberOfSteps, [1], [2] ReducingNumberOfThreads, [1], [2] reference_time (threeML.utils.OGIP.response.InstrumentResponseSet property) (threeML.utils.spectrum.binned_spectrum_set.BinnedSpectrumSet property) reference_TS (threeML.classicMLE.likelihood_ratio_test.LikelihoodRatioTest property) regularized_log() (in module threeML.utils.statistics.likelihood_functions)

RemoteDirectoryNotFound remove_callbacks() (threeML.minimizer.grid_minimizer.GridMinimizer method) remove_rebinning() (threeML.plugins.SpectrumLike.SpectrumLike method) replace_matrix() (threeML.utils.OGIP.response.InstrumentResponse method) reset_tracking() (threeML.minimizer.tutorial_material.Simple method) residual_axis (threeML.io.plotting.data_residual_plot.ResidualPlot property) residual_plot (threeML.config.plotting_structure.GenericPlotting attribute) ResidualPlot (class in threeML.config.plotting_structure) (class in threeML.io.plotting.data_residual_plot) response (threeML.plugins.DispersionSpectrumLike.DispersionSpectrumLike property) (threeML.utils.spectrum.binned_spectrum.BinnedSpectrumWithDispersion property) response_cmap (threeML.config.plugin_structure.OGIP attribute) response_file (threeML.utils.spectrum.pha_spectrum.PHASpectrum property) (threeML.utils.spectrum.pha_spectrum.PHASpectrumSet property) response_zero_color (threeML.config.plugin_structure.OGIP attribute) restore_best_fit() (threeML.classicMLE.joint_likelihood.JointLikelihood method) (threeML.minimizer.minimization.Minimizer method) (threeML.minimizer.minuit_minimizer.MinuitMinimizer method) restore_best_fit_model() (threeML.classicMLE.joint_likelihood_set.JointLikelihoodSetAnalyzer method) restore_fit() (threeML.utils.time_series.time_series.TimeSeries method) restore_last_state() (threeML.io.logging.LoggingState method) restore_MAP_fit() (threeML.bayesian.bayesian_analysis.BayesianAnalysis method) (threeML.bayesian.sampler_base.SamplerBase method) restore_median_fit() (threeML.bayesian.bayesian_analysis.BayesianAnalysis method) (threeML.bayesian.sampler_base.SamplerBase method) result (threeML.catalogs.VirtualObservatoryCatalog.VirtualObservatoryCatalog property) results (threeML.bayesian.bayesian_analysis.BayesianAnalysis property) (threeML.bayesian.sampler_base.SamplerBase property) (threeML.classicMLE.joint_likelihood.JointLikelihood property) (threeML.classicMLE.joint_likelihood_set.JointLikelihoodSet property) ResultsTable (class in threeML.io.results_table) RMF (class in threeML.utils.OGIP.response) rmf (threeML.utils.OGIP.response.OGIPResponse property) ROOT (threeML.config.fitting_structure.Optimizer attribute) RSP (class in threeML.utils.OGIP.response) rsp_filename (threeML.utils.OGIP.response.InstrumentResponse property) (threeML.utils.OGIP.response.OGIPResponse property) run() (threeML.utils.data_builders.fermi.lat_transient_builder.TransientLATDataBuilder method) (threeML.utils.data_builders.TransientLATDataBuilder method)

S

sample() (threeML.bayesian.autoemcee_sampler.AutoEmceeSampler method) (threeML.bayesian.bayesian_analysis.BayesianAnalysis method) (threeML.bayesian.dynesty_sampler.DynestyDynamicSampler method) (threeML.bayesian.dynesty_sampler.DynestyNestedSampler method) (threeML.bayesian.emcee_sampler.EmceeSampler method) (threeML.bayesian.multinest_sampler.MultiNestSampler method) (threeML.bayesian.nautilus_sampler.NautilusSampler method) (threeML.bayesian.sampler_base.SamplerBase method) (threeML.bayesian.tutorial_material.BayesianAnalysisWrap method) (threeML.bayesian.ultranest_sampler.UltraNestSampler method) (threeML.bayesian.zeus_sampler.ZeusSampler method) Sampler (class in threeML.config.fitting_structure) sampler (threeML.bayesian.bayesian_analysis.BayesianAnalysis property) SamplerBase (class in threeML.bayesian.sampler_base) samples (threeML.bayesian.bayesian_analysis.BayesianAnalysis property) (threeML.bayesian.sampler_base.SamplerBase property) (threeML.random_variates.RandomVariates property) (threeML.utils.fitted_objects.fitted_source_handler.GenericFittedSourceHandler property) (threeML.utils.fitted_objects.fitted_source_handler.VariatesContainer property) sanitize_filename() (in module threeML.io.file_utils) save_background() (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder method) (threeML.utils.data_builders.TimeSeriesBuilder method) (threeML.utils.time_series.time_series.TimeSeries method) save_configuration() (threeML.utils.data_builders.fermi.lat_transient_builder.TransientLATDataBuilder method) (threeML.utils.data_builders.TransientLATDataBuilder method) scale_factor (threeML.plugins.SpectrumLike.SpectrumLike property) (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum property) (threeML.utils.spectrum.pha_spectrum.PHASpectrum property) (threeML.utils.spectrum.pha_spectrum.PHASpectrumSet property) ScatteringChannel (class in threeML.utils.polarization.binned_polarization) ScatteringChannelSet (class in threeML.utils.polarization.binned_polarization) scipy (threeML.config.fitting_structure.Optimizer attribute) ScipyMinimizer (class in threeML.minimizer.scipy_minimizer) search_around_source() (threeML.catalogs.VirtualObservatoryCatalog.VirtualObservatoryCatalog method) secondary_sources_color (threeML.config.plotting_structure.FermiSpectrumPlot attribute) seismic (threeML.config.plotting_structure.MPLCmap attribute) seismic_r (threeML.config.plotting_structure.MPLCmap attribute) selection_color (threeML.config.plugin_structure.TimeSeries attribute) SEQUENCE (class in threeML.analysis_results) Set1 (threeML.config.plotting_structure.MPLCmap attribute) Set1_r (threeML.config.plotting_structure.MPLCmap attribute) Set2 (threeML.config.plotting_structure.MPLCmap attribute) Set2_r (threeML.config.plotting_structure.MPLCmap attribute) Set3 (threeML.config.plotting_structure.MPLCmap attribute) Set3_r (threeML.config.plotting_structure.MPLCmap attribute) set_active_measurements() (threeML.plugins.experimental.CastroLike.CastroLike method) (threeML.plugins.SpectrumLike.SpectrumLike method) set_active_time_interval() (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder method) (threeML.utils.data_builders.TimeSeriesBuilder method) set_active_time_intervals() (threeML.utils.time_series.binned_spectrum_series.BinnedSpectrumSeries method) (threeML.utils.time_series.event_list.EventList method) (threeML.utils.time_series.time_series.TimeSeries method) set_algorithm() (threeML.minimizer.minimization.Minimizer method) (threeML.minimizer.scipy_minimizer.ScipyMinimizer method) set_background_integrate_method() (threeML.plugins.SpectrumLike.SpectrumLike method) set_background_interval() (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder method) (threeML.utils.data_builders.TimeSeriesBuilder method) (threeML.utils.time_series.time_series.TimeSeries method) set_bins() (threeML.analysis_results.AnalysisResultsSet method) set_covariace_matrix() (threeML.utils.time_series.polynomial.Polynomial method) set_fixed_values() (threeML.minimizer.minimization.FunctionWrapper method) set_function() (threeML.utils.OGIP.response.InstrumentResponse method) set_inner_minimization() (threeML.plugins.FermipyLike.FermipyLike method) set_minimizer() (threeML.classicMLE.joint_likelihood.JointLikelihood method) (threeML.classicMLE.joint_likelihood_set.JointLikelihoodSet method) set_minus_log_likelihood() (threeML.minimizer.tutorial_material.CustomLikelihoodLike method) set_model() (threeML.minimizer.tutorial_material.CustomLikelihoodLike method) (threeML.plugin_prototype.PluginPrototype method) (threeML.plugins.DispersionSpectrumLike.DispersionSpectrumLike method) (threeML.plugins.experimental.CastroLike.CastroLike method) (threeML.plugins.FermipyLike.FermipyLike method) (threeML.plugins.PhotometryLike.PhotometryLike method) (threeML.plugins.SpectrumLike.SpectrumLike method) (threeML.plugins.UnbinnedPoissonLike.UnbinnedPoissonLike method) (threeML.plugins.UnresolvedExtendedXYLike.UnresolvedExtendedXYLike method) (threeML.plugins.XYLike.XYLike method) (threeML.utils.photometry.filter_set.FilterSet method) set_model_integrate_method() (threeML.plugins.DispersionSpectrumLike.DispersionSpectrumLike method) (threeML.plugins.SpectrumLike.SpectrumLike method) set_nuisance_parameter_value() (threeML.plugins.FermipyLike.FermipyLike method) set_ogip_grouping() (threeML.utils.spectrum.pha_spectrum.PHASpectrum method) (threeML.utils.spectrum.pha_spectrum.PHASpectrumSet method) set_polynomial_fit_interval() (threeML.utils.time_series.time_series.TimeSeries method) set_sampler() (threeML.bayesian.bayesian_analysis.BayesianAnalysis method) set_threeML_style() (in module threeML.io.plotting.get_style) set_x() (threeML.analysis_results.AnalysisResultsSet method) setup() (threeML.bayesian.autoemcee_sampler.AutoEmceeSampler method) (threeML.bayesian.dynesty_sampler.DynestyDynamicSampler method) (threeML.bayesian.dynesty_sampler.DynestyNestedSampler method) (threeML.bayesian.emcee_sampler.EmceeSampler method) (threeML.bayesian.multinest_sampler.MultiNestSampler method) (threeML.bayesian.nautilus_sampler.NautilusSampler method) (threeML.bayesian.sampler_base.SamplerBase method) (threeML.bayesian.ultranest_sampler.UltraNestSampler method) (threeML.bayesian.zeus_sampler.ZeusSampler method) (threeML.minimizer.minimization.GlobalMinimization method)

setup_logger() (in module threeML.io.logging) shade_fixed_sources (threeML.config.plotting_structure.FermiSpectrumPlot attribute) shade_secondary_sources (threeML.config.plotting_structure.FermiSpectrumPlot attribute) shadow (threeML.config.plotting_structure.LegendStyle attribute) ShareSpectrum (class in threeML.utils.spectrum.share_spectrum) show_background (threeML.config.plotting_structure.BinnedSpectrumPlot attribute) show_background_sources (threeML.config.plotting_structure.FermiSpectrumPlot attribute) show_configuration() (in module threeML.config.config_utils) show_legend (threeML.config.plotting_structure.BinnedSpectrumPlot attribute) (threeML.config.plotting_structure.FermiSpectrumPlot attribute) (threeML.config.plotting_structure.PointSourcePlot attribute) show_residuals (threeML.config.plotting_structure.BinnedSpectrumPlot attribute) (threeML.config.plotting_structure.FermiSpectrumPlot attribute) (threeML.io.plotting.data_residual_plot.ResidualPlot property) show_titles (threeML.config.plotting_structure.CornerStyle attribute) Significance (class in threeML.utils.statistics.stats_tools) significance (threeML.plugins.SpectrumLike.SpectrumLike property) significance_one_side() (threeML.utils.statistics.stats_tools.PoissonResiduals method) significance_per_channel (threeML.plugins.SpectrumLike.SpectrumLike property) significance_per_interval (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder property) (threeML.utils.data_builders.TimeSeriesBuilder property) silence_console_log() (in module threeML.io.logging) silence_logs() (in module threeML.io.logging) (threeML.io.logging.LoggingState method) silence_progress_bars() (in module threeML.io.logging) silence_warnings() (in module threeML.io.logging) Simple (class in threeML.minimizer.tutorial_material) simulated_parameters (threeML.plugins.SpectrumLike.SpectrumLike property) size (threeML.config.plotting_structure.ResidualPlot attribute) slice_disjoint() (in module threeML.io.plotting.light_curve_plots) smooth (threeML.config.plotting_structure.CornerStyle attribute) sort() (threeML.utils.interval.IntervalSet method) (threeML.utils.spectrum.binned_spectrum_set.BinnedSpectrumSet method) source_rate (threeML.plugins.SpectrumLike.SpectrumLike property) source_rate_error (threeML.plugins.SpectrumLike.SpectrumLike property) speclite_filters (threeML.utils.photometry.filter_set.FilterSet property) SPECRESP_MATRIX (class in threeML.utils.OGIP.response) Spectral (threeML.config.plotting_structure.MPLCmap attribute) Spectral_r (threeML.config.plotting_structure.MPLCmap attribute) SpectralContourPlot (class in threeML.io.plotting.model_plot) SPECTRUM (class in threeML.utils.OGIP.pha) SpectrumLike (class in threeML.plugins.SpectrumLike) spring (threeML.config.plotting_structure.MPLCmap attribute) spring_r (threeML.config.plotting_structure.MPLCmap attribute) sqrt_sum_of_squares() (in module threeML.utils.statistics.stats_tools) start (threeML.plugins.experimental.CastroLike.CastroLike property) (threeML.plugins.experimental.CastroLike.IntervalContainer property) (threeML.plugins.UnbinnedPoissonLike.EventObservation property) (threeML.utils.interval.Interval property) start_time (threeML.utils.time_interval.TimeInterval property) start_times (threeML.utils.time_interval.TimeIntervalSet property) start_tracking() (threeML.minimizer.tutorial_material.Simple method) starts (threeML.utils.interval.IntervalSet property) startup_warnings (threeML.config.config_structure.Logging attribute) std (threeML.random_variates.RandomVariates property) step (threeML.config.plotting_structure.BinnedSpectrumPlot attribute) (threeML.config.plotting_structure.FermiSpectrumPlot attribute) step() (threeML.minimizer.minimization.ProfileLikelihood method) step_generator() (in module threeML.utils.step_parameter_generator) step_plot() (in module threeML.io.plotting.step_plot) stop (threeML.plugins.experimental.CastroLike.CastroLike property) (threeML.plugins.experimental.CastroLike.IntervalContainer property) (threeML.plugins.UnbinnedPoissonLike.EventObservation property) (threeML.utils.interval.Interval property) stop_time (threeML.utils.time_interval.TimeInterval property) stop_times (threeML.utils.time_interval.TimeIntervalSet property) stop_tracking() (threeML.minimizer.tutorial_material.Simple method) stops (threeML.utils.interval.IntervalSet property) summer (threeML.config.plotting_structure.MPLCmap attribute) summer_r (threeML.config.plotting_structure.MPLCmap attribute) suppress_stdout() (in module threeML.io.suppress_stdout) Swift (threeML.config.catalog_structure.Catalogs attribute) SwiftGRBCatalog (class in threeML.catalogs.Swift) SwiftXRTLike (class in threeML.plugins.SwiftXRTLike) synthetic_background_plugin (threeML.utils.spectrum.spectrum_likelihood.PoissonObservedModeledBackgroundStatistic property) sys_errors (threeML.utils.histogram.Histogram property) (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum property) sys_errors_per_bin (threeML.utils.spectrum.binned_spectrum_set.BinnedSpectrumSet property)

T

tab10 (threeML.config.plotting_structure.MPLCmap attribute) tab10_r (threeML.config.plotting_structure.MPLCmap attribute) tab20 (threeML.config.plotting_structure.MPLCmap attribute) tab20_r (threeML.config.plotting_structure.MPLCmap attribute) tab20b (threeML.config.plotting_structure.MPLCmap attribute) tab20b_r (threeML.config.plotting_structure.MPLCmap attribute) tab20c (threeML.config.plotting_structure.MPLCmap attribute) tab20c_r (threeML.config.plotting_structure.MPLCmap attribute) Table (class in threeML.io.table) tag (threeML.plugin_prototype.PluginPrototype property) TemporalBinner (class in threeML.utils.binner) temporary_directory() (in module threeML.io.file_utils) terrain (threeML.config.plotting_structure.MPLCmap attribute) terrain_r (threeML.config.plotting_structure.MPLCmap attribute) test_all_toggles() (in module threeML.test.test_verbosity) test_analysis_results_input_output() (in module threeML.test.test_analysis_results) test_analysis_results_input_output_hdf() (in module threeML.test.test_analysis_results) test_analysis_set_input_output() (in module threeML.test.test_analysis_results) test_analysis_set_input_output_hdf() (in module threeML.test.test_analysis_results) test_bayesian_input_output() (in module threeML.test.test_analysis_results) test_conversion_fits2hdf() (in module threeML.test.test_analysis_results) test_corner_plotting() (in module threeML.test.test_analysis_results) test_directory_check() (in module threeML.test.test_file_utils) test_energy_time_fit() (in module threeML.test.test_time_energy_fit) test_error_propagation() (in module threeML.test.test_analysis_results) test_fermi_relative_mission_times() (in module threeML.test.test_utils) test_file_check() (in module threeML.test.test_file_utils) test_get_package_data() (in module threeML.test.test_get_package_data) test_goodness_of_fit() (in module threeML.test.test_goodness_of_fit) test_is_power_of_two() (in module threeML.test.test_power_of_two_utils) test_logging_toggles() (in module threeML.test.test_verbosity) test_next_power_of_two() (in module threeML.test.test_power_of_two_utils) test_one_free_parameter_input_output() (in module threeML.test.test_analysis_results) test_poisson_classes() (in module threeML.test.test_generic) test_progress_bars() (in module threeML.test.test_verbosity) test_sanatize() (in module threeML.test.test_file_utils) test_step_generator_setup() (in module threeML.test.test_generic) test_UnresolvedExtendedxy_plot() (in module threeML.test.test_UnresolvedExtendedXYLike) test_UnresolvedExtendedXYLike_assign_to_source() (in module threeML.test.test_UnresolvedExtendedXYLike) test_UnresolvedExtendedXYLike_chi2() (in module threeML.test.test_UnresolvedExtendedXYLike) test_UnresolvedExtendedXYLike_dataframe() (in module threeML.test.test_UnresolvedExtendedXYLike) test_UnresolvedExtendedXYLike_poisson() (in module threeML.test.test_UnresolvedExtendedXYLike) test_UnresolvedExtendedXYLike_txt() (in module threeML.test.test_UnresolvedExtendedXYLike) test_xy_plot() (in module threeML.test.test_XYLike) test_XYLike_assign_to_source() (in module threeML.test.test_XYLike) test_XYLike_chi2() (in module threeML.test.test_XYLike) test_XYLike_dataframe() (in module threeML.test.test_XYLike) test_XYLike_poisson() (in module threeML.test.test_XYLike) test_XYLike_txt() (in module threeML.test.test_XYLike) threeML module threeML.analysis_results module threeML.bayesian module threeML.bayesian.autoemcee_sampler module threeML.bayesian.bayesian_analysis module threeML.bayesian.dynesty_sampler module threeML.bayesian.emcee_sampler module threeML.bayesian.multinest_sampler module threeML.bayesian.nautilus_sampler module threeML.bayesian.sampler_base module threeML.bayesian.tutorial_material module threeML.bayesian.ultranest_sampler module threeML.bayesian.zeus_sampler module threeML.catalogs module threeML.catalogs.catalog_utils module threeML.catalogs.Fermi module threeML.catalogs.FermiGBM module threeML.catalogs.FermiLAT module threeML.catalogs.FermiLLE module threeML.catalogs.Swift module threeML.catalogs.VirtualObservatoryCatalog module threeML.classicMLE module threeML.classicMLE.goodness_of_fit module threeML.classicMLE.joint_likelihood module threeML.classicMLE.joint_likelihood_set module threeML.classicMLE.likelihood_ratio_test module threeML.config module threeML.config.catalog_structure module threeML.config.config module threeML.config.config_structure module threeML.config.config_utils module threeML.config.fitting_structure module threeML.config.plotting_structure module threeML.config.plugin_structure module threeML.config.point_source_structure module threeML.data_list module threeML.exceptions module threeML.exceptions.custom_exceptions module threeML.io module threeML.io.calculate_flux module threeML.io.cern_root_utils module threeML.io.configuration module threeML.io.detect_notebook module threeML.io.dict_with_pretty_print module threeML.io.download_from_ftp module threeML.io.download_from_http module threeML.io.file_utils module threeML.io.fits_file module threeML.io.get_heasarc_table_as_pandas module threeML.io.hdf5_utils module threeML.io.logging module threeML.io.network module threeML.io.package_data module threeML.io.plotting module threeML.io.plotting.cmap_cycle module threeML.io.plotting.data_residual_plot module threeML.io.plotting.get_style module threeML.io.plotting.light_curve_plots module threeML.io.plotting.model_plot module threeML.io.plotting.model_plot_2D module threeML.io.plotting.model_plot_tags module threeML.io.plotting.post_process_data_plots module threeML.io.plotting.step_plot module threeML.io.results_table module threeML.io.rich_display module threeML.io.serialization module threeML.io.suppress_stdout module threeML.io.table module threeML.io.uncertainty_formatter module threeML.minimizer module threeML.minimizer.grid_minimizer module threeML.minimizer.minimization module threeML.minimizer.minuit_minimizer module threeML.minimizer.scipy_minimizer module threeML.minimizer.tutorial_material module threeML.parallel module threeML.parallel.parallel_client module threeML.plugin_prototype module threeML.plugins module threeML.plugins.BinnedProfileLike module threeML.plugins.DispersionSpectrumLike module threeML.plugins.experimental module threeML.plugins.experimental.CastroLike module threeML.plugins.FermipyLike module threeML.plugins.OGIPLike module threeML.plugins.PhotometryLike module

threeML.plugins.SpectrumLike module threeML.plugins.SwiftXRTLike module threeML.plugins.UnbinnedPoissonLike module threeML.plugins.UnresolvedExtendedXYLike module threeML.plugins.XYLike module threeML.random_variates module threeML.test module threeML.test.test_analysis_results module threeML.test.test_file_utils module threeML.test.test_generic module threeML.test.test_get_package_data module threeML.test.test_goodness_of_fit module threeML.test.test_power_of_two_utils module threeML.test.test_time_energy_fit module threeML.test.test_UnresolvedExtendedXYLike module threeML.test.test_utils module threeML.test.test_verbosity module threeML.test.test_XYLike module threeML.utils module threeML.utils.bayesian_blocks module threeML.utils.binner module threeML.utils.cartesian module threeML.utils.data_builders module threeML.utils.data_builders.fermi module threeML.utils.data_builders.fermi.gbm_data module threeML.utils.data_builders.fermi.lat_data module threeML.utils.data_builders.fermi.lat_transient_builder module threeML.utils.data_builders.time_series_builder module threeML.utils.data_download module threeML.utils.data_download.Fermi_GBM module threeML.utils.data_download.Fermi_GBM.download_GBM_data module threeML.utils.data_download.Fermi_LAT module threeML.utils.data_download.Fermi_LAT.download_LAT_data module threeML.utils.data_download.Fermi_LAT.download_LLE_data module threeML.utils.differentiation module threeML.utils.fermi_relative_mission_time module threeML.utils.fitted_objects module threeML.utils.fitted_objects.fitted_point_sources module threeML.utils.fitted_objects.fitted_source_handler module threeML.utils.histogram module threeML.utils.interval module threeML.utils.numba_utils module threeML.utils.OGIP module threeML.utils.OGIP.pha module threeML.utils.OGIP.response module threeML.utils.photometry module threeML.utils.photometry.filter_library module threeML.utils.photometry.filter_set module threeML.utils.photometry.photometric_observation module threeML.utils.polarization module threeML.utils.polarization.binned_polarization module threeML.utils.power_of_two_utils module threeML.utils.progress_bar module threeML.utils.spectrum module threeML.utils.spectrum.binned_spectrum module threeML.utils.spectrum.binned_spectrum_set module threeML.utils.spectrum.pha_spectrum module threeML.utils.spectrum.share_spectrum module threeML.utils.spectrum.spectrum_likelihood module threeML.utils.statistics module threeML.utils.statistics.gammaln module threeML.utils.statistics.likelihood_functions module threeML.utils.statistics.stats_tools module threeML.utils.step_parameter_generator module threeML.utils.string_utils module threeML.utils.time_interval module threeML.utils.time_series module threeML.utils.time_series.binned_spectrum_series module threeML.utils.time_series.event_list module threeML.utils.time_series.polynomial module threeML.utils.time_series.time_series module threeML.utils.unique_deterministic_tag module time_edges (threeML.utils.time_interval.TimeIntervalSet property) time_intervals (threeML.utils.spectrum.binned_spectrum_set.BinnedSpectrumSet property) (threeML.utils.time_series.time_series.TimeSeries property) time_series (threeML.config.config_structure.Config attribute) (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder property) (threeML.utils.data_builders.TimeSeriesBuilder property) time_to_index() (threeML.utils.spectrum.binned_spectrum_set.BinnedSpectrumSet method) TimeInterval (class in threeML.utils.time_interval) TimeIntervalSet (class in threeML.utils.time_interval) TimeSeries (class in threeML.config.plugin_structure) (class in threeML.utils.time_series.time_series) TimeSeriesBuilder (class in threeML.utils.data_builders) (class in threeML.utils.data_builders.time_series_builder) TimeSeriesFit (class in threeML.config.plugin_structure) TimeTypeNotKnown title_fmt (threeML.config.plotting_structure.CornerStyle attribute) to_binned_spectrum() (threeML.utils.spectrum.pha_spectrum.PHASpectrum method) to_csv() (threeML.plugins.XYLike.XYLike method) to_dataframe() (threeML.plugins.XYLike.XYLike method) to_fits() (threeML.utils.OGIP.response.InstrumentResponse method) to_hdf5() (threeML.utils.photometry.photometric_observation.PhotometericObservation method) to_LATLike() (threeML.utils.data_builders.fermi.lat_transient_builder.LATObservation method) (threeML.utils.data_builders.fermi.lat_transient_builder.TransientLATDataBuilder method) (threeML.utils.data_builders.TransientLATDataBuilder method) to_ogip() (threeML.utils.spectrum.binned_spectrum.Quality method) to_pandas() (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum method) to_polarlike() (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder method) (threeML.utils.data_builders.TimeSeriesBuilder method) to_spectrumlike() (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder method) (threeML.utils.data_builders.TimeSeriesBuilder method) to_string() (threeML.utils.interval.Interval method) (threeML.utils.interval.IntervalSet method) to_txt() (threeML.plugins.XYLike.XYLike method) toggle_progress_bars() (in module threeML.io.logging) total (threeML.utils.histogram.Histogram property) total_count (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum property) total_count_error (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum property) total_counts_per_interval (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder property) (threeML.utils.data_builders.TimeSeriesBuilder property) total_error (threeML.utils.histogram.Histogram property) total_model_color (threeML.config.plotting_structure.FermiSpectrumPlot attribute) total_rate (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum property) total_rate_error (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum property) tqdm() (in module threeML.utils.progress_bar) trange() (in module threeML.utils.progress_bar) transform() (in module threeML.utils.fitted_objects.fitted_source_handler) TransientLATDataBuilder (class in threeML.utils.data_builders) (class in threeML.utils.data_builders.fermi.lat_transient_builder) trap_integral() (in module threeML.utils.fitted_objects.fitted_point_sources) trapz (threeML.config.point_source_structure.IntegrateMethod attribute) trigger_time (threeML.utils.data_builders.fermi.gbm_data.GBMCdata property) (threeML.utils.data_builders.fermi.gbm_data.GBMTTEFile property) (threeML.utils.data_builders.fermi.lat_data.LLEFile property) TriggerDoesNotExist triggername (threeML.utils.data_builders.fermi.lat_transient_builder.LATObservation property) TS_distribution (threeML.classicMLE.likelihood_ratio_test.LikelihoodRatioTest property) tstart (threeML.plugins.SpectrumLike.SpectrumLike property) (threeML.utils.data_builders.fermi.gbm_data.GBMCdata property) (threeML.utils.data_builders.fermi.gbm_data.GBMTTEFile property) (threeML.utils.data_builders.fermi.lat_data.LLEFile property) (threeML.utils.data_builders.fermi.lat_transient_builder.LATObservation property) (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder property) (threeML.utils.data_builders.TimeSeriesBuilder property) (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum property) tstop (threeML.plugins.SpectrumLike.SpectrumLike property) (threeML.utils.data_builders.fermi.gbm_data.GBMCdata property) (threeML.utils.data_builders.fermi.gbm_data.GBMTTEFile property) (threeML.utils.data_builders.fermi.lat_data.LLEFile property) (threeML.utils.data_builders.fermi.lat_transient_builder.LATObservation property) (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder property) (threeML.utils.data_builders.TimeSeriesBuilder property) (threeML.utils.spectrum.binned_spectrum.BinnedSpectrum property) turbo (threeML.config.plotting_structure.MPLCmap attribute) turbo_r (threeML.config.plotting_structure.MPLCmap attribute) twilight (threeML.config.plotting_structure.MPLCmap attribute) twilight_r (threeML.config.plotting_structure.MPLCmap attribute) twilight_shifted (threeML.config.plotting_structure.MPLCmap attribute) twilight_shifted_r (threeML.config.plotting_structure.MPLCmap attribute)

U

ultranest (threeML.config.fitting_structure.Sampler attribute) ultranest_setup (threeML.config.fitting_structure.BayesianDefault attribute) UltraNestSampler (class in threeML.bayesian.ultranest_sampler) unbinned (threeML.config.plugin_structure.TimeSeriesFit attribute) unbinned_polyfit() (in module threeML.utils.time_series.polynomial) UnbinnedPoissonLike (class in threeML.plugins.UnbinnedPoissonLike) uncertainty_formatter() (in module threeML.io.uncertainty_formatter) UnitCubeSampler (class in threeML.bayesian.sampler_base) UnresolvedExtendedXYLike (class in threeML.plugins.UnresolvedExtendedXYLike) update_logging_level() (in module threeML.io.logging)

update_nuisance_parameters() (threeML.plugin_prototype.PluginPrototype method) update_tag() (threeML.utils.fitted_objects.fitted_source_handler.GenericFittedSourceHandler method) upper_error (threeML.utils.fitted_objects.fitted_source_handler.GenericFittedSourceHandler property) (threeML.utils.fitted_objects.fitted_source_handler.VariatesContainer property) url (threeML.config.catalog_structure.CatalogServer attribute) use_effective_area_correction() (threeML.plugins.SpectrumLike.SpectrumLike method) use_joblib (threeML.config.config_structure.Parallel attribute) use_median_fit (threeML.config.fitting_structure.BayesianDefault attribute) use_parallel (threeML.config.config_structure.Parallel attribute) use_threeml_style (threeML.config.plotting_structure.GenericPlotting attribute) usr (threeML.config.config_structure.Logging attribute)

V

valid_setup_keys (threeML.minimizer.grid_minimizer.GridMinimizer attribute) (threeML.minimizer.minuit_minimizer.MinuitMinimizer attribute) (threeML.minimizer.scipy_minimizer.ScipyMinimizer attribute) value (threeML.random_variates.RandomVariates property) (threeML.utils.data_builders.fermi.lat_transient_builder.LATLikelihoodParameter property) values (threeML.utils.fitted_objects.fitted_source_handler.GenericFittedSourceHandler property) (threeML.utils.fitted_objects.fitted_source_handler.VariatesContainer property) values() (threeML.data_list.DataList method) vanimo (threeML.config.plotting_structure.MPLCmap attribute) vanimo_r (threeML.config.plotting_structure.MPLCmap attribute) var (threeML.random_variates.RandomVariates property) VariatesContainer (class in threeML.utils.fitted_objects.fitted_source_handler) Vector() (in module threeML.utils.numba_utils) VectorComplex128 (in module threeML.utils.numba_utils) VectorComplex64 (in module threeML.utils.numba_utils) VectorFloat32 (in module threeML.utils.numba_utils) VectorFloat64 (in module threeML.utils.numba_utils)

VectorInt16 (in module threeML.utils.numba_utils) VectorInt32 (in module threeML.utils.numba_utils) VectorInt64 (in module threeML.utils.numba_utils) VectorInt8 (in module threeML.utils.numba_utils) VectorUint16 (in module threeML.utils.numba_utils) VectorUint32 (in module threeML.utils.numba_utils) VectorUint64 (in module threeML.utils.numba_utils) VectorUint8 (in module threeML.utils.numba_utils) verbosity (threeML.minimizer.minimization.Minimizer property) view_count_spectrum() (threeML.plugins.SpectrumLike.SpectrumLike method) view_lightcurve() (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder method) (threeML.utils.data_builders.TimeSeriesBuilder method) (threeML.utils.time_series.binned_spectrum_series.BinnedSpectrumSeries method) (threeML.utils.time_series.event_list.EventList method) (threeML.utils.time_series.time_series.TimeSeries method) viridis (threeML.config.plotting_structure.MPLCmap attribute) viridis_r (threeML.config.plotting_structure.MPLCmap attribute) VirtualObservatoryCatalog (class in threeML.catalogs.VirtualObservatoryCatalog)

W

waic() (in module threeML.utils.statistics.stats_tools) warn (threeML.utils.spectrum.binned_spectrum.Quality property) warn_channels_color (threeML.config.plotting_structure.DataHistPlot attribute) WARNING (threeML.config.config_structure.LoggingLevel attribute) wavelength_bounds (threeML.utils.photometry.filter_set.FilterSet property) waveunits (threeML.utils.photometry.filter_set.FilterSet property) weight_by_counts() (threeML.utils.OGIP.response.InstrumentResponseSet method) weight_by_exposure() (threeML.utils.OGIP.response.InstrumentResponseSet method) widths (threeML.utils.interval.IntervalSet property) winter (threeML.config.plotting_structure.MPLCmap attribute) winter_r (threeML.config.plotting_structure.MPLCmap attribute) Wistia (threeML.config.plotting_structure.MPLCmap attribute)

Wistia_r (threeML.config.plotting_structure.MPLCmap attribute) within_directory() (in module threeML.io.file_utils) worker() (threeML.classicMLE.joint_likelihood_set.JointLikelihoodSet method) write() (threeML.utils.OGIP.pha.PHAWrite method) write_pha() (threeML.plugins.DispersionSpectrumLike.DispersionSpectrumLike method) (threeML.plugins.OGIPLike.OGIPLike method) (threeML.plugins.SpectrumLike.SpectrumLike method) write_pha_from_binner() (threeML.utils.data_builders.time_series_builder.TimeSeriesBuilder method) (threeML.utils.data_builders.TimeSeriesBuilder method) write_to() (threeML.analysis_results.AnalysisResultsSet method) (threeML.classicMLE.joint_likelihood_set.JointLikelihoodSet method) writeto() (threeML.io.fits_file.FITSFile method)

X

x (threeML.plugins.XYLike.XYLike property) xlogy() (in module threeML.utils.statistics.likelihood_functions)

xlogy_one() (in module threeML.utils.statistics.likelihood_functions) XYLike (class in threeML.plugins.XYLike)

Y

y (threeML.plugins.XYLike.XYLike property) yerr (threeML.plugins.XYLike.XYLike property) YlGn (threeML.config.plotting_structure.MPLCmap attribute) YlGn_r (threeML.config.plotting_structure.MPLCmap attribute) YlGnBu (threeML.config.plotting_structure.MPLCmap attribute)

YlGnBu_r (threeML.config.plotting_structure.MPLCmap attribute) YlOrBr (threeML.config.plotting_structure.MPLCmap attribute) YlOrBr_r (threeML.config.plotting_structure.MPLCmap attribute) YlOrRd (threeML.config.plotting_structure.MPLCmap attribute) YlOrRd_r (threeML.config.plotting_structure.MPLCmap attribute)

Z

zeus (threeML.config.fitting_structure.Sampler attribute)

zeus_setup (threeML.config.fitting_structure.BayesianDefault attribute) ZeusSampler (class in threeML.bayesian.zeus_sampler)